New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2173565	NA (NA)	15 (0.790)	9/102	NT	100%	pseudogene (306/2041 nt) pseudogene (306/339 nt)	gatR gatR	DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
	?	W3110S.gb	= 3932933	0 (0.000)					coding (222/1608 nt)	dppA	dipeptide transporter

ATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATC  >  W3110S.gb/3932869‑3932994                                                                 |                                                              aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc                                                         <  1:1039246‑M2/71‑7 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc                                                         <  1:781629‑M2/71‑7 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc                                                         <  1:1460273‑M2/71‑7 (MQ=255)  tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc                                                         <  1:603262‑M2/70‑7 (MQ=255)  tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc                                                         <  1:1474444‑M2/70‑7 (MQ=255)       ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc                                                   <  1:332754‑M2/16‑1 (MQ=255)             ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa                                              >  1:411939‑M2/1‑53 (MQ=255)             ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta                                               >  1:801559‑M2/1‑53 (MQ=255)             ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta                                               >  1:397426‑M2/1‑53 (MQ=255)              cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc                                                     <  1:939792‑M2/62‑11 (MQ=255)                      tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGa                                     <  1:680219‑M2/30‑1 (MQ=255)                      tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGa                                     <  1:35953‑M2/30‑1 (MQ=255)                               agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg                             >  1:352483‑M2/32‑69 (MQ=255)                                gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa                           <  1:1210801‑M2/40‑1 (MQ=255)                                gccgcctgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa                           <  1:1615352‑M2/40‑1 (MQ=255)                                  cgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc                        <  1:73901‑M2/43‑1 (MQ=255)                                    gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga                         >  1:1779797‑M2/1‑30 (MQ=255)                                     ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatattgacacaggcctaagc                           >  1:1698668‑M2/1‑29 (MQ=255)                                     ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc                           >  1:1338770‑M2/1‑29 (MQ=255)                                     ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc                           >  1:1820450‑M2/1‑29 (MQ=255)                                       gtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa                    >  1:1442464‑M2/24‑70 (MQ=255)                                          tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgt                <  1:1552721‑M2/71‑48 (MQ=255)                                          cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa                 >  1:254391‑M2/21‑70 (MQ=255)                                          cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa                 >  1:1078924‑M2/21‑70 (MQ=255)                                           actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa                                             <  1:751810‑M2/22‑1 (MQ=255)                                               aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca           >  1:103816‑M2/1‑19 (MQ=255)                                                tgctgggtaagatcAGTGATCCCGGGACTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta             >  1:607754‑M2/15‑68 (MQ=255)                                                      gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa    >  1:682777‑M2/9‑71 (MQ=255)                                                        aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATc  >  1:390330‑M2/7‑71 (MQ=255)                                                          gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg                             <  1:1790666‑M2/38‑1 (MQ=255)                                                                 |                                                              ATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATC  >  W3110S.gb/3932869‑3932994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.