New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3748799 =	3 (0.160)	19 (1.000)	10/102	NT	86.4%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

CTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT  >  W3110S.gb/4056154‑4056280                                                                     |                                                           cTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                          <  1:1311248/71‑1 (MQ=255)    aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTa                                                         <  1:1089606/69‑1 (MQ=255)    aaCGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTa                                                         <  1:1446231/69‑1 (MQ=255)            gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCaa                                               >  1:1700602/1‑71 (MQ=255)            gAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                >  1:380333/1‑70 (MQ=255)                     ttCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGa                                       >  1:622612/1‑70 (MQ=255)                       cTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGAt                                      <  1:420276/69‑1 (MQ=255)                               atatTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTa                                                         <  1:1122536/42‑1 (MQ=255)                               atatTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTa                                                         <  1:216344/42‑1 (MQ=255)                                tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                          <  1:923374/40‑1 (MQ=255)                                tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGt                                                          <  1:396499/40‑1 (MQ=255)                                tattatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCa                                                <  1:801175/50‑1 (MQ=255)                                  ttatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                     >  1:114272/1‑43 (MQ=255)                                  ttatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                     >  1:1166763/1‑43 (MQ=255)                                  ttatCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGa                                                     >  1:1286336/1‑43 (MQ=255)                                    atCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                        >  1:744514/1‑38 (MQ=255)                                    atCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTaa                                                        >  1:1548027/1‑38 (MQ=255)                                    atCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                         >  1:413881/1‑69 (MQ=255)                                    atCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt                         >  1:1702485/1‑69 (MQ=255)                                         tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                    <  1:211114/69‑1 (MQ=255)                                         tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                    <  1:429420/69‑1 (MQ=255)                                         tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                    <  1:510301/69‑1 (MQ=255)                                         tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                  >  1:1645275/1‑71 (MQ=255)                                         tAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATaa                  >  1:919816/1‑71 (MQ=255)                                           aTTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATg                >  1:598687/1‑71 (MQ=255)                                                         aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt  >  1:1401775/1‑71 (MQ=255)                                                         aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt  >  1:1308009/1‑71 (MQ=255)                                                         aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt  >  1:206066/1‑71 (MQ=255)                                                         aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt  >  1:1830770/1‑71 (MQ=255)                                                         aCTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt  >  1:1605304/1‑71 (MQ=255)                                                                     |                                                           CTAAACGAACTGAATATATTTTCTGTGCCAATATTATCTCTAATTTCAAAAAAGTTACTTTTAATGTCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT  >  W3110S.gb/4056154‑4056280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.