Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3627317	3627988	672	70 [0]	[0] 104	[pldB]–[rhtB]	[pldB],[rhtB]

ATTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGCT  >  W3110S.gb/3627255‑3627316                                                              | atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:549945/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:623433/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:609439/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:583062/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:579073/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:56378/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:554027/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:553251/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:552639/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:625096/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:520342/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:518042/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:515885/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:485554/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:483560/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:48116/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:456866/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:435162/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:664052/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:98809/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:89936/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:88375/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:78731/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:710477/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:691477/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:691248/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:687283/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:434307/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:654491/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:644836/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:642277/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:639958/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:63317/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:632705/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:627357/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:168118/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:211838/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:211743/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:208787/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:206066/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:186875/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:184787/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:175749/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:174379/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:273722/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:16636/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:158897/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:152506/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:136544/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:134919/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:12949/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:122508/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:120949/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:345917/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:420300/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:398627/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:394826/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:391619/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:374841/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:374402/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:350197/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:348551/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:110710/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:344272/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:340065/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:338934/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:331670/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:328380/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:308622/1‑62 (MQ=255) atTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGct  >  1:296410/1‑62 (MQ=255)                                                              | ATTAAGACATCAAACCCCAAATGGAACAGGTCATAGGCCAGTTCCGCATATTTTACGTAGCT  >  W3110S.gb/3627255‑3627316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑