Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4317471	4326006	8536	4 [0]	[0] 61	[rpiR]–[phnG]	[rpiR],rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,[phnG]

TACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAA  >  W3110S.gb/4326007‑4326054 |                                                tACGGTCAGCGTCCAGCGGTGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:79604/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:58882/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:450329/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:463765/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:476927/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:482204/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:484069/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:500390/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:503158/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:505744/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:517755/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:530013/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:532733/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:568234/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:583534/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:584350/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:585820/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:445296/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:596061/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:597302/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:632972/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:636680/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:645360/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:650966/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:661937/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:667130/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:668250/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:78842/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:86474/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:93007/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:95232/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:30302/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:123919/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:145860/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:151576/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:156627/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:18589/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:19686/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:198219/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:202685/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:213018/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:222567/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:235098/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:290481/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:293676/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:11127/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:304060/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:315271/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:324211/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:333215/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:359333/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:362175/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:380807/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:394602/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:404796/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:405468/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:40895/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:412092/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:412593/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGaa  >  1:414321/1‑48 (MQ=255) tACGGTCAGCGTCCAGCGGGGCAATAAGGGGTTCt               >  1:250433/1‑35 (MQ=255) |                                                TACGGTCAGCGTCCAGCGGGGCAATAAGGGTTTCTGATAAGTTTTGAA  >  W3110S.gb/4326007‑4326054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑