Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3658665	3698430	39766	290 [0]	[0] 37	[rffT]–[rbsR]	[rffT],wzxE,rffA,rffC,rffH,rffG,rffD,rffE,wzzE,rfe,rho,rhoL,trxA,rhlB,gpp,rep,yifN,yifO,ppiC,ilvC,ilvY,ilvA,ilvD,ilvE,ilvM,ilvG,ilvL,yifB,yifE,hdfR,trpT,aspT,rrfC,rrlC,gltU,rrsC,yieP,hsrA,[rbsR]

CGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGATCTC  >  W3110S.gb/3698431‑3698492 |                                                              cGGGCAACATCTTTCATTGTAGCCAATCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:438317/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:926410/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:712821/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:739148/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:810349/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:811077/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:822766/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:862000/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:88841/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:923580/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:645552/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:941677/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:958617/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:972453/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:975307/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:975771/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:988488/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:995712/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:99694/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:43180/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:117064/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:184451/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:207232/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:212882/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:232349/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:255300/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:325298/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:378071/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:653914/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:43896/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:473950/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:487560/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:528161/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:543486/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:563836/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:578817/62‑1 (MQ=255) cGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGAtctc  <  1:1038046/62‑1 (MQ=255) |                                                              CGGGCAACATCTTTCATTGTAGCCAAGCGTCACCTCTGCCTGTCTAAAAATGCGTCGATCTC  >  W3110S.gb/3698431‑3698492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑