| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 59 (1.540) | 24/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 140 total aligned reads displayed.
ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/576000‑576065 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1625048/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2841641/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3066522/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2660822/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:919501/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2658300/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1429101/71‑1ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1368942/1‑71ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:340671/1‑71 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1004458/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3588205/71‑1 TGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:545336/71‑1 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:2142802/1‑70 GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:2408712/1‑70 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2184891/1‑71 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:3329168/1‑71 ATGAACCCTGTTCAATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:3204196/1‑70 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGT < 1:3519846/71‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:2948099/70‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:1219631/1‑70 TGAACCATGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2826844/1‑70 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:1600142/1‑71 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1838156/71‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2466449/63‑1 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTA > 1:2453421/1‑65 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:3605911/1‑62 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3158958/62‑1 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:534493/62‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAC > 1:1648582/1‑64 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3657327/61‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2410002/59‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:3424433/58‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2455582/58‑1 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAG > 1:3256293/1‑71 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC > 1:1158387/1‑71 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC > 1:2728512/1‑71 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2230653/1‑59 CTATGGCTCCAGATGACAAACATGAGCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC > 1:1628626/1‑71 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG < 1:1737568/71‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG < 1:1206572/71‑1 GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAG < 1:1795865/71‑1 CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:2632967/51‑1 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3542268/49‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3642756/46‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:119487/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3067612/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3276917/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2116603/45‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:2440851/44‑1 ATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1376338/44‑1 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:1322331/1‑68 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2029656/1‑45 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3086283/1‑42 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC < 1:2870225/71‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGC < 1:2780465/56‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACT < 1:1499609/48‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:2452495/1‑43 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA > 1:3031026/1‑43 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:608833/42‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:2760414/42‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:677767/41‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:2285597/42‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:585700/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:534576/40‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:955128/39‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1086027/39‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:1622841/39‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:1418359/38‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTAGAGCAGAAATTGCCACT < 1:851287/71‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACT < 1:133453/71‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:120648/1‑40 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG > 1:2630755/1‑40 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:3681643/40‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:301998/38‑1 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1112917/1‑36 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1515417/1‑36 ATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTA < 1:1692774/70‑1 TCAGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCA > 1:2282955/1‑71 TCAGGGACTTGTTCGCACCTTCCTTAGTACTCATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC < 1:2568930/70‑1 AGGGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCT < 1:1527075/38‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:2410341/71‑1 GGACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT < 1:1834993/71‑1 GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTG < 1:3140082/71‑1 GACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > 1:1989251/1‑70 ACTTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3584946/42‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC < 1:2717359/62‑1 TTGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:1890545/40‑1 TGTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGA < 1:3515355/39‑1 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATgg > 1:2562272/1‑62 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:1804772/1‑71 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCC > 1:2814390/1‑71 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGT > 1:1396159/1‑65 GTTCGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2691831/1‑40 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGC > 1:1606154/1‑41 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAAT > 1:837367/1‑38 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:2120223/1‑37 CGCACCTTCCTTAGTACTGATGCAGCTACAGCAGAAA > 1:373861/1‑37 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTC < 1:3379055/53‑1 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:262849/1‑39 CCTTCCTTAGTACTGATGCAGCTACAGCAGAAATTGCCA > 1:2904799/1‑39 ATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/274304‑274373‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/576000‑576065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |