| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 26 (0.680) | 28 (1.020) +AGGGTCCCTAAGTC |
18/72 | NT | 68.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 10 (0.260) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71196‑71335 | ggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt > 1:3425349/1‑71 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg > 1:2350987/1‑70 (MQ=255) aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt < 1:1828306/71‑1 (MQ=255) cgagcgatTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:1716896‑M1/71‑10 (MQ=255) cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc > 1:2029168/1‑70 (MQ=255) cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa > 1:79461/1‑62 (MQ=255) gagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct > 1:3521464‑M1/1‑61 (MQ=255) cgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:2719070/1‑70 (MQ=255) gTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa < 1:85822/69‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:346182/55‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:2298312/71‑1 (MQ=255) tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc < 1:3583318/71‑1 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaa < 1:3629675‑M1/68‑18 (MQ=255) ttccgtgCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggggccctaagtctaa < 1:1374502‑M1/68‑18 (MQ=255) tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa > 1:701898/1‑71 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCTGTCAAGTTGTCATAAagggtccctaagtcta > 1:2683680‑M1/2‑52 (MQ=255) ccgTGCCGGTTGTGAAGAAAAAGTGAATGATGTAG‑‑GTCAAGTTGTCATAAagggtcc > 1:2098772‑M1/2‑50 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1711044‑M1/71‑23 (MQ=255) tGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct < 1:1325722‑M1/58‑10 (MQ=255) gCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGa < 1:210509/58‑1 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaa < 1:3308078‑M1/71‑25 (MQ=255) ccGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga > 1:1321332‑M1/1‑47 (MQ=255) cGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacga < 1:1866188‑M1/68‑23 (MQ=255) ggTTGTGAAGAAAAAGTGAATGATGAAGCCGTCAAGTTGTCATAATTGGTAACGAAt > 1:686045/1‑57 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacg < 1:137888‑M1/65‑22 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc > 1:2419948/1‑61 (MQ=255) gTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc > 1:3658812/1‑61 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAtt < 1:2955376/45‑1 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAtt < 1:2644717/45‑1 (MQ=255) ttGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGa < 1:2973279/53‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa > 1:1746684‑M1/1‑41 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt < 1:2847014/70‑1 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:2128641/1‑70 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCtt > 1:3233164/1‑70 (MQ=255) gtgAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGACATAAa > 1:335441‑M1/1‑41 (MQ=255) aagaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTGACGAATCAGACAATTGACGGCTTGACg > 1:2060856/1‑71 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:972013‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtct > 1:2541442‑M1/1‑37 (MQ=255) agaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagg > 1:1809578‑M1/1‑37 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:2531442‑M1/71‑36 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:1745143/1‑69 (MQ=255) gaaAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGa < 1:130652/71‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:784873/36‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAt < 1:1365694/36‑1 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccccaagtctaaaacgaaaggcccagtctt < 1:1551124‑M1/70‑36 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccc < 1:505864‑M1/43‑9 (MQ=255) aaaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACg > 1:1928984/1‑68 (MQ=255) aaatGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:204066‑M1/71‑38 (MQ=255) aaaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAg < 1:198270/70‑1 (MQ=255) aaaGTGAATGATGTAGCCTTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:942945‑M1/68‑36 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:1337225‑M1/68‑36 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagt > 1:2922158‑M1/1‑33 (MQ=255) aaaGTGAATGATGTAGCCGTCAAGTTGTCATAATTg > 1:3259528/1‑36 (MQ=255) aaGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAg < 1:3342761/71‑1 (MQ=255) aGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgac > 1:3642796‑M1/1‑31 (MQ=255) gTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgact > 1:3650810‑M1/1‑30 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgag > 1:382466‑M1/1‑27 (MQ=255) aaTGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaac < 1:1678465‑M1/47‑21 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:2131969‑M1/1‑23 (MQ=255) atgTAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcc > 1:3471832‑M1/1‑23 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcg < 1:3519584‑M1/71‑52 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag > 1:3411923‑M1/1‑20 (MQ=255) tAGCCGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaag > 1:3232908‑M1/1‑20 (MQ=255) cGTCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttt < 1:2495319‑M1/70‑55 (MQ=255) cGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGaa < 1:3332753/71‑1 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttc < 1:3345124‑M1/51‑38 (MQ=255) tCAAGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctt < 1:1243766‑M1/49‑36 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGt < 1:3604503/61‑1 (MQ=255) tCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATc < 1:1635664/71‑1 (MQ=255) cAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATcc > 1:3583335/1‑71 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:2670861‑M1/1‑12 (MQ=255) aaGTTGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttattt > 1:187090‑M1/1‑12 (MQ=255) tGTCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcctttcgttttatttgacc > 1:910016‑M1/1‑8 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCtt > 1:1167963/1‑71 (MQ=255) gTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCtt > 1:1009510/1‑71 (MQ=255) tCATAAagggtccctaagtctaaaacgaaaggcccagtctttcgactgagcc < 1:2609277‑M1/52‑47 (MQ=255) cATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCa > 1:1021838/1‑46 (MQ=255) aTAATTGGTAACGATTCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCg > 1:2846151/1‑70 (MQ=255) aTAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGt > 1:2532345/1‑71 (MQ=255) tAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTc > 1:78215/1‑71 (MQ=255) aTTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCa > 1:2447128/1‑71 (MQ=255) | GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAATTGACGGCTTGACGGAGTAGCATAGGGTTTGCAGAATCCCTGCTTCGTCCA > W3110S.gb/71196‑71335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |