| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4547372 | 20 (0.520) | 6 (0.190) | 6/82 | NT | 19.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 32 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 | tgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:341489‑M1/61‑69 (MQ=255)gaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:1806938/70‑1 (MQ=255) gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTg > 1:1652018/1‑71 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 1:3219990‑M1/70‑9 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata < 1:1704035‑M1/70‑13 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcata > 1:3018480‑M1/1‑57 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:381165‑M1/27‑1 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg > 1:2891688‑M1/1‑44 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:2155028/1‑71 (MQ=255) cactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTa < 1:263926‑M1/38‑1 (MQ=255) ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:3578881/70‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:3304502/1‑59 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt > 1:1771077/1‑71 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCA < 1:1819978‑M1/41‑1 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAt < 1:1329453‑M1/39‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:2339277/1‑41 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:851307/1‑61 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt > 1:580309/1‑71 (MQ=255) tgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt > 1:1110926‑M1/31‑43 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa < 1:580408/39‑1 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:1370829/71‑1 (MQ=255) cacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:3125142‑M1/29‑70 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa < 1:1443651/54‑1 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCat < 1:3327009/51‑1 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCaaa > 1:2639685/1‑36 (MQ=255) aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:3188579/1‑52 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcctcgcggacaaactttt > 1:1105776‑M1/1‑33 (MQ=255) aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa < 1:1023394/71‑1 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaa > 1:2882503‑M1/1‑27 (MQ=255) cAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt < 1:54927/71‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaa < 1:2001619/71‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa > 1:39948‑M1/16‑71 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:444964‑M1/56‑1 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:1692305‑M1/56‑1 (MQ=255) aaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc < 1:1723836‑M1/51‑1 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa > 1:1886509/1‑46 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:1358128/70‑1 (MQ=255) taCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata > 1:1150104/1‑70 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTa < 1:1298978/71‑1 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac > 1:3152042‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac > 1:90913‑M1/1‑13 (MQ=255) cAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:3232337/71‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:1370204/71‑1 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc < 1:1437599/70‑1 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:2740878‑M1/1‑42 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:2357412‑M1/1‑42 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:3681674‑M1/1‑42 (MQ=255) TTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:3424077‑M1/1‑42 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:1139713‑M1/70‑1 (MQ=255) TGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa < 1:2284982‑M1/70‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:1578942‑M1/42‑1 (MQ=255) GGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc < 1:177781‑M1/70‑1 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1955730‑M1/47‑1 (MQ=255) GGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:697601‑M1/47‑1 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:2174796‑M1/71‑67 (MQ=255) ggCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattcta < 1:1674365‑M1/71‑67 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:2405353‑M1/1‑71 (MQ=255) GGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaa > 1:3106926‑M1/1‑71 (MQ=255) CAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa > 1:337525‑M1/1‑61 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa < 1:2659353‑M1/60‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAg < 1:2152082‑M1/70‑1 (MQ=255) AAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGc > 1:2207613‑M1/1‑71 (MQ=255) | GAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGC > W3110S.gb/4547304‑4547442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |