| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 51 (1.330) | 50 (1.680) +CGCGTACAACT |
29/78 | NT | 53.7% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 60 (1.560) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 158 total aligned reads displayed.
TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 | tcctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:293404‑M2/1‑1 (MQ=255)tcctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:3430770‑M2/1‑1 (MQ=255) cctacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactc > 1:268594‑M2/70‑70 (MQ=255) tacctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg > 1:3450947‑M2/68‑71 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg > 1:1327445‑M2/66‑69 (MQ=255) aaaaTTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:2440548/71‑1 (MQ=255) tttCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:774079/1‑71 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACAt < 1:1089164‑M2/12‑1 (MQ=255) tCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACAt < 1:1487219/70‑1 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTATAACGACAAGTCTGACATa > 1:210731/1‑70 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:2919738/70‑1 (MQ=255) ttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:378183‑M2/57‑71 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1820899‑M2/55‑70 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:1053995/70‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:346799/70‑1 (MQ=255) cTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:2283128/1‑71 (MQ=255) gTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGAcc > 1:2214332/1‑71 (MQ=255) gcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGc > 1:3068212‑M2/50‑71 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:3295236‑M2/1‑1 (MQ=255) ctctctactgtttctccatacccgtttttttggacgcgtacaactc < 1:2204345‑M2/1‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:1924302‑M2/44‑46 (MQ=255) aTCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg > 1:1104128/1‑71 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGt < 1:1165963/47‑1 (MQ=255) tctcTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAg < 1:2553263/70‑1 (MQ=255) tctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:947129‑M2/13‑1 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaaa > 1:929058/1‑55 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCa > 1:1751404/1‑70 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:804843/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:3420011/1‑71 (MQ=255) ctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACt > 1:3224846/1‑71 (MQ=255) actgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAc > 1:2119337‑M2/40‑58 (MQ=255) tgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:2075540‑M2/38‑70 (MQ=255) gtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc > 1:3025991‑M2/37‑70 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTg < 1:1544830/69‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:723103/71‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCaa > 1:2251434‑M2/36‑38 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:63306‑M2/34‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:396419‑M2/34‑1 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa < 1:887632/46‑1 (MQ=255) ttctccatacccgtttttttggacgcgtacaactc < 1:2018419‑M2/1‑1 (MQ=255) ttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:306388‑M2/35‑71 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2126759‑M2/34‑70 (MQ=255) tctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2318837‑M2/34‑70 (MQ=255) ctccatacccgtttttttggccgcggacaactCAAGTCTTACATAAATg > 1:4597‑M2/33‑49 (MQ=255) ctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:3133433‑M2/33‑71 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCg < 1:2302630/53‑1 (MQ=255) aCTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:3319656/69‑1 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac > 1:2145491‑M2/30‑71 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTg > 1:601992/1‑36 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACg > 1:1754650/1‑71 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACg > 1:3291172/1‑71 (MQ=255) atacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACg > 1:1597487‑M2/29‑71 (MQ=255) cTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa < 1:2726812/63‑1 (MQ=255) acccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAc > 1:2761343‑M2/27‑45 (MQ=255) acccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2048409‑M2/27‑70 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAcc > 1:1031382‑M2/26‑45 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAg > 1:592749‑M2/26‑53 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2417717‑M2/26‑69 (MQ=255) tAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1611420/1‑68 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:172570‑M2/25‑68 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1925804‑M2/25‑68 (MQ=255) aaTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac < 1:830334/65‑1 (MQ=255) tttttttggatgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2620597‑M2/22‑65 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:3092875‑M2/29‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:109003‑M2/34‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAAt < 1:805743/37‑1 (MQ=255) ttGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTCCAATTACACGc > 1:1520170/1‑65 (MQ=255) tGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:3420598/1‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGCTCGt > 1:3513862‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:2789248‑M2/20‑71 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:1656716‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGa > 1:2977271/1‑37 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:2533017/53‑1 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:1144225/70‑1 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:3559669‑M2/53‑1 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:630626‑M2/54‑1 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa < 1:481301/55‑1 (MQ=255) tCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtct > 1:3042217/1‑71 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:1713160/1‑70 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:393567/70‑1 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:980113‑M2/29‑1 (MQ=255) cgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAcc > 1:1798329‑M2/10‑71 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCAc > 1:282453‑M2/9‑39 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1263786‑M2/34‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAgatgg < 1:857891‑M2/51‑3 (MQ=255) tacaactCAAGGCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:3656568‑M2/51‑1 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1426928‑M2/34‑1 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3277188‑M2/34‑1 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCa < 1:518869/41‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:2131786‑M2/6‑61 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:706788‑M2/6‑61 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAccgca < 1:1197014‑M2/65‑3 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1411105‑M2/6‑71 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:3277191‑M2/34‑1 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:2345512‑M2/51‑1 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccac > 1:131006‑M2/2‑71 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccac > 1:778568‑M2/2‑71 (MQ=255) tCAAGTCTGAAATAAATGACCGCTATGAGCACTGCaa < 1:1857168‑M2/36‑1 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAaccac > 1:639234/1‑71 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAaccacc > 1:2846369/1‑71 (MQ=255) | TCGGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCACC > W3110S.gb/235974‑236114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |