Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,214 T→C 64.1% F276F (TTT→TTC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,2140TC64.1% 67.1 / 64.4 64F276F (TTT→TTCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (15/8);  new base C (16/25);  total (31/33)
Fisher's exact test for biased strand distribution p-value = 6.77e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

GTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAA  >  W3110S.gb/71147‑71284
                                                                   |                                                                      
gTTTTGACGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCg                                                                      <  1:2835787/70‑1 (MQ=255)
   ttGACGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGcc                                                                  >  1:2735359/1‑71 (MQ=255)
         aTCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgt                                                            >  1:3674975/1‑71 (MQ=255)
         aTCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgt                                                            <  1:998583/71‑1 (MQ=255)
         aTCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtg                                                             >  1:2946964/1‑70 (MQ=255)
           cAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgtg                                                           >  1:1500891/1‑70 (MQ=255)
              ctctATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTtaaga                                                       <  1:464448/71‑1 (MQ=255)
                 tATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaa                                                     >  1:2183814/1‑70 (MQ=255)
                 tATTTCTCGCCGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaagaa                                                      <  1:2071436/69‑1 (MQ=255)
                  aTTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     <  1:2304029/69‑1 (MQ=255)
                   tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     <  1:1556879/68‑1 (MQ=255)
                   tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAg                                                  >  1:60251/1‑71 (MQ=255)
                   tttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAg                                                  >  1:2216414/1‑71 (MQ=255)
                    ttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGt                                                 >  1:157549/1‑71 (MQ=255)
                    ttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGt                                                 >  1:1911295/1‑71 (MQ=255)
                    ttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGt                                                 >  1:1919365/1‑71 (MQ=255)
                     tctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAg                                                  >  1:1745237/1‑69 (MQ=255)
                      ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                                <  1:2220067/70‑1 (MQ=255)
                      ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                                >  1:1833388/1‑70 (MQ=255)
                      ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCAGGTTGTGAAGAAAAAGTg                                                <  1:1561440/70‑1 (MQ=255)
                         gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               <  1:3505669/68‑1 (MQ=255)
                         gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               <  1:1041830/68‑1 (MQ=255)
                         gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatg                                            <  1:1842287/71‑1 (MQ=255)
                           gggTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAat                                             <  1:3040469/66‑1 (MQ=255)
                            ggTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                         <  1:3042084/70‑1 (MQ=255)
                            gatATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                         <  1:3577358/69‑1 (MQ=255)
                             gTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGt                                        <  1:1813618/71‑1 (MQ=255)
                                tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTtgtg                                                           <  1:3398526/49‑1 (MQ=255)
                                tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaa                                                         <  1:3023803/51‑1 (MQ=255)
                                tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               <  1:3537713/61‑1 (MQ=255)
                                tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               <  1:1366375/61‑1 (MQ=255)
                                  tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAg                                      >  1:2834277/1‑68 (MQ=255)
                                  tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGcc                                    >  1:3109888/1‑70 (MQ=255)
                                  tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:3438361/1‑71 (MQ=255)
                                  tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:1693412/1‑71 (MQ=255)
                                   aaaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGt                                  >  1:1471802/1‑71 (MQ=255)
                                   aaaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGt                                  >  1:3419918/1‑71 (MQ=255)
                                         tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:2626256/1‑71 (MQ=255)
                                           cACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTg                           <  1:750919/70‑1 (MQ=255)
                                             ccGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAat                                             <  1:1830017/50‑1 (MQ=255)
                                              cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTc                         >  1:2951702/1‑69 (MQ=255)
                                              cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTc                         >  1:1681349/1‑69 (MQ=255)
                                              cGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       <  1:2755255/71‑1 (MQ=255)
                                              cGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       <  1:1206145/71‑1 (MQ=255)
                                               ggggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:1783807/1‑70 (MQ=255)
                                               ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:3443849/1‑70 (MQ=255)
                                                gggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTc                                 <  1:2504668/59‑1 (MQ=255)
                                                 ggCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt                    >  1:3425349/1‑71 (MQ=255)
                                                     aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTgg                 >  1:2350987/1‑70 (MQ=255)
                                                     aGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGt                <  1:1828306/71‑1 (MQ=255)
                                                      gCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGt                                                 <  1:3517576/37‑1 (MQ=255)
                                                       cccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTg                                                <  1:276148/37‑1 (MQ=255)
                                                       cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCaa                               <  1:912335/54‑1 (MQ=255)
                                                         cgagcgatTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct            <  1:1716896‑M1/71‑10 (MQ=255)
                                                         cgagcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAAc             >  1:2029168/1‑70 (MQ=255)
                                                         cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgat                                          <  1:2517134/41‑1 (MQ=255)
                                                         cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa                     >  1:79461/1‑62 (MQ=255)
                                                          gagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct            >  1:3521464‑M1/1‑61 (MQ=255)
                                                            gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAatga                                           >  1:996412/1‑37 (MQ=255)
                                                             cgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt         >  1:2719070/1‑70 (MQ=255)
                                                              gagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGt                          >  1:2791865/1‑52 (MQ=255)
                                                               agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            <  1:513176/49‑1 (MQ=255)
                                                               agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            <  1:3130211/49‑1 (MQ=255)
                                                                gTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCa       <  1:85822/69‑1 (MQ=255)
                                                                 tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAt                    <  1:346182/55‑1 (MQ=255)
                                                                 tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc    <  1:2298312/71‑1 (MQ=255)
                                                                 tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc    <  1:3583318/71‑1 (MQ=255)
                                                                   tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACaa  >  1:701898/1‑71 (MQ=255)
                                                                   |                                                                      
GTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAA  >  W3110S.gb/71147‑71284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: