| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3073461 = | 70 (1.290) | 3 (0.060) | 3/90 | NT | 4.5% | coding (391/510 nt) | yggD | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 3073499 = | 64 (1.320) | coding (353/510 nt) | yggD | predicted DNA‑binding transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3073535‑3073461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCCTGTTCGTTCAGGTAATG > W3110S.gb/3073499‑3073566 GATTTGCCGATGACATGACCTTGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT < 1:3925045/71‑1GATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT < 1:1271632/71‑1GATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT < 1:3242571/71‑1GATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT < 1:5061019/71‑1 ATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT > 1:820564/1‑70 TTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTATGAC > 1:34387/1‑71 TTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTATGACG < 1:3900635/49‑1 CAACGTCAATAGCATAACCCGCAATGCGATGCTCTAT < 1:2457115/37‑1 GCATAACCCGCAATGCGATGCTCTATGACGTTGCTGATAAAATCCCAGGTCATGTCATCGG > 1:3260340/1‑61 TAACCCGCAATGCGATGCTCTATGACGTTGCTGATAAAATCCC < 1:628585/43‑1 ACCCGCAATGCGATGCTCTATGACGTTGCTGATAAAATCCCAG > 1:430705/1‑43 TGACGTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCC < 1:2954274/56‑1 TGACGTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGG > 1:3803649/1‑45 GACGTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCCTGTTCGTTCAGGTAAT > 1:1649676/1‑71 ACGTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCCTGTTCGTTCAGGTAATG < 1:2524346/71‑1 ACGTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCCTGTTCGTTCAGGTAAT < 1:5134943/70‑1 GTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCG > 1:3606293/1‑40 GATTTGCCGATGACATGACCTGGGATTTTATCAGCAACGTCAATAGCATAACCCGCAATGCGATGCTCTATGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/3073535‑3073461‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacgTTGCTGATAAAATCCCAGGTCATGTCATCGGCAAATCCGGGCGTTTCATCCTGTTCGTTCAGGTAATG > W3110S.gb/3073499‑3073566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |