New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3748799 =	3 (0.060)	70 (1.290)	36/100	NT	95.9%	coding (184/984 nt)	tnaB	tryptophan transporter of low affinity
	?	W3110S.gb	4056222 =	NA (NA)					intergenic (‑564/+15)	yrhB/insB	hypothetical protein/IS1 transposase InsAB'

TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748866‑3748799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC  >  W3110S.gb/4056222‑4056291                                                                                                                                            TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGG                                                                      >  1:2316546/1‑70   TCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTA                                                                    <  1:4114369/70‑1       GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT                                                                  <  1:3820074/68‑1       GGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT                                                                  <  1:3095353/68‑1              TTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        >  1:480582/1‑71              TTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATG                                                                 <  1:4469432/62‑1               TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        >  1:3158321/1‑70               TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        >  1:381649/1‑70               TTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        >  1:695708/1‑70                TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      >  1:4072933/1‑71                TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTT                                                       >  1:1803245/1‑70                TATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        <  1:2266553/69‑1                    CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                  <  1:3566394/71‑1                    CTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                  <  1:2115154/71‑1                      TATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                  >  1:3155129/1‑69                      TATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAAT                                                                  <  1:1947562/53‑1                        TCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA                                                                >  1:3615854/1‑53                           TTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTTATAGTGTT                                           <  1:4623142/71‑1                           TTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATA                                                >  1:3961814/1‑66                                TGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                      >  1:4019246/1‑71                                  GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                      <  1:99266/69‑1                                  GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATG                                      <  1:4234254/69‑1                                  GTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTT                                           <  1:4226648/64‑1                                   TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTC                                   <  1:3046203/71‑1                                   TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTA                                        <  1:2564870/66‑1                                   TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      <  1:2477783/52‑1                                   TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACT                                                        <  1:216162/50‑1                                   TTTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAA                                                                   <  1:2370263/39‑1                                    TTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                    >  1:2697250/1‑69                                    TTTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTT                                    >  1:3069457/1‑69                                     TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCA                                  <  1:1460482/70‑1                                     TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTAT                                       >  1:1800515/1‑65                                     TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAG                                               >  1:3677908/1‑57                                     TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      >  1:224881/1‑50                                     TTCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATG                                                                 >  1:3868554/1‑39                                      TCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA                                                                >  1:2873610/1‑39                                      TCAATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGA                                                                >  1:2175816/1‑39                                        AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATA                              <  1:606262/71‑1                                        AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                               <  1:1062972/70‑1                                        AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                               <  1:216592/70‑1                                        AATGCTTCATTCCGGGTTATTGTTATTAGGGTAATCACTCCAACTAAT                                                     >  1:2254100/1‑48                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                            >  1:4224415/1‑71                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                            >  1:3522668/1‑71                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAT                            >  1:3528545/1‑71                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      <  1:1983959/45‑1                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      <  1:219436/45‑1                                          TGCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTA                                                      <  1:93487/45‑1                                           GCTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG                           >  1:4351866/1‑71                                           GCTTCATTCCGGGTTATTGTTATTAGGGTAATGAC                                                               >  1:3170099/1‑35                                            CTTCATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATG                           <  1:867644/70‑1                                               CATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                        <  1:2648610/70‑1                                                ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                        <  1:519347/69‑1                                                ATTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                        <  1:821261/69‑1                                                 TTCCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGAT                     <  1:1696343/71‑1                                                   CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGA                   >  1:4685220/1‑71                                                   CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG                    <  1:540782/70‑1                                                   CCGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG                    <  1:3440364/70‑1                                                    CGGGTTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATG                    <  1:4625540/69‑1                                                        TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                               <  1:2277682/54‑1                                                        TTATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAT                               <  1:271335/54‑1                                                        TTATTGTTATTAGGGTAATGACTCCAACTTATTGA                                                  <  1:945389/35‑1                                                          ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT             <  1:4645351/70‑1                                                          ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT             >  1:1754035/1‑70                                                          ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT             >  1:5135586/1‑70                                                          ATTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT             >  1:776060/1‑70                                                           TTGTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC            <  1:553803/70‑1                                                             GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG         >  1:206978/1‑71                                                             GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG         >  1:2601031/1‑71                                                             GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG         >  1:2433679/1‑71                                                             GTTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT          <  1:2190043/70‑1                                                              TTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGC        <  1:966815/71‑1                                                              TTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG         <  1:3363028/70‑1                                                              TTATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATG         <  1:3369143/70‑1                                                                ATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG      >  1:1050569/1‑71                                                                ATTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCC                        <  1:2011135/53‑1                                                                 TTAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG      <  1:3964969/70‑1                                                                  TAGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG      >  1:1763686/1‑69                                                                   AGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAG                                 >  1:2570245/1‑41                                                                    GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC  <  1:171569/71‑1                                                                                                                                            TTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3748866‑3748799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCC  >  W3110S.gb/4056222‑4056291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.