New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 4544451	66 (1.220)	3 (0.060)	3/96	NT	3.6%	intergenic (‑268/‑1188)	yjhA/fimB	N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
	?	W3110S.gb	= 4544475	96 (1.850)					intergenic (‑292/‑1164)	yjhA/fimB	N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
Rejected: Frequency below/above cutoff threshold.

TTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4544408‑4544451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACATTCAAATCAATTAAAC  <  W3110S.gb/4544475‑4544407                                                                                                                   TTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCTATTTTATGACTCTGGGTAAAATGG                                              <  1:1853950/69‑1   TAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCTATTTTATGACTCTGGGTAAAATGGAT                                            >  1:2162174/1‑69           TTGAATGTTCGTAAGCTATATCACTTACTCAATCTATTTTATGACTCTGGGTAAAATGGATTG                                          >  1:2821778/1‑63                                            CTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACATTCAAATCAATTAAAC  >  1:4864927/1‑70                                            CTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACA                  >  1:2929132/1‑54                                            CTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATA                               >  1:4414356/1‑41                                                                                                                   TTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/4544408‑4544451 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcTATTTTATGACTCTGGGTAAAATGGATTGAGTAAGTGATATAGCTTACGAACATTCAAATCAATTAAAC  <  W3110S.gb/4544475‑4544407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.