| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 49 (0.900) | 43 (0.830) +TC |
28/96 | NT | 64.7% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 169 total aligned reads displayed.
TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314385‑314522 | tttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:599499/71‑1 (MQ=255) ttGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct > 1:2693455/1‑70 (MQ=255) tGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa > 1:2541226/1‑71 (MQ=255) aGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAg > 1:1553695/1‑70 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:3591300‑M1/59‑71 (MQ=255) tataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:2697761‑M1/59‑71 (MQ=255) tAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:3270233/71‑1 (MQ=255) tAAGCGCCAGAAAGACCCCCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:4913978/71‑1 (MQ=255) ataggttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:3888221‑M1/13‑1 (MQ=255) gcgcCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGt < 1:4817172/71‑1 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:3284951‑M1/54‑71 (MQ=255) gttttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:2021536‑M1/54‑71 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa > 1:435254‑M1/51‑63 (MQ=255) ttaccgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:1045438‑M1/51‑68 (MQ=255) cAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGac < 1:4615736/71‑1 (MQ=255) aGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca < 1:450217/71‑1 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCctct < 1:341806/51‑1 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac > 1:3216536/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac > 1:1328761/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGacac > 1:5114519/1‑71 (MQ=255) gAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGaca > 1:2958589/1‑70 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTa < 1:3966076/52‑1 (MQ=255) aaaGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACAcg > 1:2768488/1‑71 (MQ=255) cgtcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCt > 1:322377‑M1/47‑49 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:4202314‑M1/27‑1 (MQ=255) tcttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCgg < 1:1705009‑M1/27‑1 (MQ=255) gACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCgg > 1:3893153/1‑71 (MQ=255) ttcgctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCaa < 1:2635335‑M1/13‑1 (MQ=255) ccGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa < 1:3844111/71‑1 (MQ=255) cGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTAc < 1:3695121/46‑1 (MQ=255) gctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTTGACACGCGGCTaa > 1:2577057‑M1/40‑70 (MQ=255) gctgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:4308999‑M1/40‑69 (MQ=255) cATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTa > 1:4049650/1‑68 (MQ=255) tgacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGt > 1:2917009‑M1/38‑54 (MQ=255) gacttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGt < 1:2388274‑M1/33‑1 (MQ=255) cTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:1005983/70‑1 (MQ=255) ttcccacttttcagcgaggcccgggatcactgaTCTTACCCAGc < 1:1502622‑M1/11‑1 (MQ=255) aTTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCaa < 1:2699639/45‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:580882/71‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:880312/69‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:4028977/69‑1 (MQ=255) tttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2803792/69‑1 (MQ=255) cccacttttcagcgaggcccgggatctctgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:4872323‑M1/32‑70 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:1326999‑M1/40‑1 (MQ=255) cccacttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa > 1:4131340‑M1/32‑69 (MQ=255) ttCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa < 1:4286762/61‑1 (MQ=255) tCTGCCGAGGTGCCCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:4324152/1‑71 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:4641922/1‑60 (MQ=255) tCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:3347384/1‑71 (MQ=255) cttttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTg > 1:2723818‑M1/28‑45 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:1658544‑M1/44‑1 (MQ=255) tttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 1:2042847‑M1/44‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:764194‑M1/40‑1 (MQ=255) ttcagcgaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca > 1:4112636‑M1/25‑70 (MQ=255) cGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:1294403/38‑1 (MQ=255) cGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAAt < 1:3013916/38‑1 (MQ=255) cGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAATTGAGTAAACTCtcag < 1:3968178/71‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCt < 1:2465867/48‑1 (MQ=255) tGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:2454596/1‑68 (MQ=255) gaggcccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1835103‑M1/19‑71 (MQ=255) ccTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt < 1:4353306/71‑1 (MQ=255) cccgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:4525766‑M1/15‑49 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct > 1:1133510‑M1/13‑56 (MQ=255) cgggatcactgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:4955655‑M1/13‑60 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:1684499/70‑1 (MQ=255) cGCCAGTGCCTCTTACCCAGCAATAATGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTc < 1:1432601/70‑1 (MQ=255) gCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1169846/1‑70 (MQ=255) cAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:4080223/71‑1 (MQ=40) aGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 1:4051067/70‑1 (MQ=40) tGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 1:4672400/1‑70 (MQ=37) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAg < 1:4771682‑M1/32‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:2093582‑M1/35‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:2814104‑M1/4‑48 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:679089‑M1/53‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:4164999‑M1/52‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:1065150‑M1/52‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:2264557‑M1/52‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:2357190‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc < 1:1056539‑M1/67‑1 (MQ=255) tgaTCTTACCCAGCAATAGTCGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:1972620‑M1/4‑64 (MQ=255) gCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:3573967/1‑43 (MQ=38) gaTCTTACCCAGCAATAGTGGTCACGCGGCTAAGTGAGTaa > 1:3273021‑M1/3‑41 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:3636140‑M1/35‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa < 1:4981957‑M1/35‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:5204428‑M1/3‑41 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:1062200‑M1/3‑41 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag < 1:1956248‑M1/53‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca < 1:3927587‑M1/61‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:1610582‑M1/68‑1 (MQ=255) gaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa < 1:4907043‑M1/68‑1 (MQ=255) ccTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:3047507/1‑70 (MQ=33) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa < 1:616572‑M1/40‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:343507‑M1/52‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:4385720‑M1/52‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:738054‑M1/54‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa < 1:5098087‑M1/69‑1 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:2268186‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa > 1:4706552‑M1/2‑70 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:1089021‑M1/2‑69 (MQ=255) aTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa > 1:1873581‑M1/2‑69 (MQ=255) | TTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAA > W3110S.gb/314385‑314522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |