| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 69 (1.300) | 43/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 187 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 | ggACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:1788359‑M2/1‑69 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc > 1:1962312‑M2/1‑66 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:2480037‑M2/71‑7 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:599454‑M2/71‑7 (MQ=255) tttCTGACCTTCGTCCAGAGATATGTAACAATCGTTCTGGATAGAAGAGAAGTGTACGAACACtgatct < 1:483063‑M2/69‑7 (MQ=255) tatctGCCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:4045695‑M2/65‑5 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:4141819‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:262138‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:166700‑M2/71‑11 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:1080170‑M2/64‑5 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:2959176‑M2/54‑71 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:1995924‑M2/54‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:3140011‑M2/52‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtacgatcACACATCTTTAGAGCCATCg > 1:448112‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:3529072‑M2/1‑55 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:5121975‑M2/1‑55 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:3743179‑M2/1‑55 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:3469050‑M2/69‑15 (MQ=255) gaaaacaataacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:1157820‑M2/51‑71 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACATtgatcttacccagcaat > 1:3232022‑M2/1‑52 (MQ=255) gTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:3650312‑M2/1‑51 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:4281399‑M2/24‑1 (MQ=255) acaataacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt < 1:3041238‑M2/18‑1 (MQ=255) ccAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:4466123‑M2/1‑49 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAg > 1:1169498‑M2/44‑70 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:716445‑M2/28‑1 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:3890823‑M2/70‑26 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca > 1:4383231‑M2/1‑42 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg > 1:2435267‑M2/38‑69 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:3814614‑M2/11‑1 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:148721‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:4808381‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1904839‑M2/37‑71 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1731661‑M2/37‑71 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2235812‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2029077‑M2/1‑38 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:2699687‑M2/37‑1 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:3352259‑M2/71‑36 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:4680208‑M2/1‑35 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatctt > 1:2077651‑M2/1‑32 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:102068‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1626783‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:1181521‑M2/1‑30 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:5179096‑M2/69‑40 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagca < 1:696548‑M2/45‑16 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:1120914‑M2/44‑1 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCATTGt > 1:44279‑M2/23‑70 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccga > 1:3666440‑M2/19‑57 (MQ=255) tattacgtgggtaggatcACACATC‑TTAGAGCCATCGt < 1:1816698‑M2/20‑1 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc < 1:3691541‑M2/70‑49 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCCATCGACAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:245729‑M2/18‑71 (MQ=255) attacgtgggtaggatcACACATCTTTAGAGCAATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:5002305‑M2/44‑1 (MQ=255) ttacgtgggtaggatcACCCATCTTTAGAGCCATCGTCa > 1:4898616‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2752016‑M2/17‑42 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:5094849‑M2/17‑42 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1261922‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:4538051‑M2/17‑71 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:4779961‑M2/16‑70 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:4741522‑M2/1‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaa < 1:4611419‑M2/62‑44 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:357447‑M2/14‑67 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGa < 1:2259869‑M2/57‑1 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:2163565‑M2/28‑1 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:3312719‑M2/1‑12 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:2325991‑M2/1‑11 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:941321‑M2/1‑11 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:3786040‑M2/1‑11 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:4628752‑M2/7‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1887496‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaact > 1:4209627‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtga > 1:1693819‑M2/1‑9 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:1827319‑M2/44‑36 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggct > 1:111130‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAtttt < 1:66975‑M2/65‑1 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:2484359‑M2/6‑71 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:1850726‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:2635957‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:828229‑M2/67‑1 (MQ=255) gatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTAc < 1:209955‑M2/67‑1 (MQ=255) aCGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:1988772‑M2/58‑51 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:4934878‑M2/71‑65 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa < 1:2226964‑M2/69‑1 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:541498‑M2/3‑71 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3265883‑M2/3‑71 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa < 1:4016611‑M2/69‑1 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3467619‑M2/2‑70 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:235813‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca < 1:292127‑M2/53‑50 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:877353‑M2/70‑68 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:4503824/1‑35 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:3052712/71‑1 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:2035921/1‑46 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4942875/1‑46 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:164836/62‑1 (MQ=255) acaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:2576611/1‑64 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:5077385‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:1399082‑M2/70‑70 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact > 1:4584581‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgag > 1:3971746‑M2/1‑1 (MQ=255) ctgatcttaaccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga < 1:1227354‑M2/61‑61 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |