| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 80 (1.610) | 43/92 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
Only 100 of 110 total aligned reads displayed.
GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA > W3110S.gb/3751730‑3751861 | atattacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGta < 1:2949382‑M2/8‑1 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:2372320‑M2/60‑70 (MQ=255) ttacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:1317227‑M2/60‑70 (MQ=255) ttaaatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaat > 1:3025156‑M2/60‑70 (MQ=255) tacatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata > 1:692662‑M2/59‑70 (MQ=255) acatctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaataaa > 1:1537521‑M2/58‑71 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaataaa < 1:4051401‑M2/14‑1 (MQ=255) catctgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc < 1:2338948‑M2/15‑1 (MQ=255) tgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaaa > 1:2479574‑M2/53‑54 (MQ=255) tgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:4137794‑M2/53‑69 (MQ=255) tgctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:4767955‑M2/53‑69 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:2837119‑M2/19‑1 (MQ=255) ctataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgag < 1:1481907‑M2/18‑1 (MQ=255) tataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAAc > 1:3636899‑M2/50‑64 (MQ=255) ataccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGAt > 1:2812935‑M2/49‑70 (MQ=255) taccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGtaaata < 1:4582774‑M2/12‑1 (MQ=255) taccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:3621964‑M2/19‑1 (MQ=255) taccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgaga < 1:157377‑M2/19‑1 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagaga > 1:1647725‑M2/46‑66 (MQ=255) ccgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGAcc > 1:1049782‑M2/46‑71 (MQ=255) cgattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt < 1:2855874‑M2/27‑1 (MQ=255) cgattaattcgccagatatatatgcaagcaccataatttactaaAACAAGTAAATAAACGAGAGATGACCt < 1:4705895‑M2/27‑1 (MQ=255) gattaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCtt < 1:4706565‑M2/28‑1 (MQ=255) ttaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagaga > 1:1499350‑M2/42‑62 (MQ=255) ttaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagaga > 1:2381444‑M2/42‑62 (MQ=255) ttaattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACgagaga > 1:2420442‑M2/42‑62 (MQ=255) taattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTg > 1:4023768‑M2/41‑70 (MQ=255) taattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTg > 1:1665597‑M2/41‑70 (MQ=255) aattcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGc < 1:2481389‑M2/31‑1 (MQ=255) attcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaa < 1:1760742‑M2/33‑1 (MQ=255) attcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaa < 1:3016952‑M2/33‑1 (MQ=255) attcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaa < 1:1130226‑M2/33‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAg > 1:4504056‑M2/38‑43 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGtaa > 1:4714731‑M2/38‑46 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga < 1:341880‑M2/17‑1 (MQ=255) ttcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:312657‑M2/34‑1 (MQ=255) tcgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACg > 1:3633637‑M2/37‑52 (MQ=255) cgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa > 1:5028865‑M2/36‑45 (MQ=255) cgccagatatatatgcaagcaccatcatttactaaAACAAGtaaa > 1:3034049‑M2/36‑45 (MQ=255) cgccagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAg > 1:105858‑M2/36‑71 (MQ=255) cagatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCa < 1:2305474‑M2/39‑1 (MQ=255) agatatatttgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:4351295‑M2/40‑1 (MQ=255) agatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCa > 1:4288417‑M2/32‑70 (MQ=255) gatatatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:4738714‑M2/31‑47 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt < 1:4550847‑M2/27‑1 (MQ=255) atatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCt < 1:4281190‑M2/27‑1 (MQ=255) tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg > 1:2162845‑M2/29‑65 (MQ=255) tatatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg > 1:629791‑M2/29‑65 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:4213926‑M2/28‑44 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:5147425‑M2/28‑44 (MQ=255) atatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAt > 1:4779417‑M2/28‑70 (MQ=255) tatatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAtt < 1:1088668‑M2/44‑1 (MQ=255) tatgcaagcaccatcatttactaaAACAAGTAAATAAACga > 1:1316784‑M2/25‑41 (MQ=255) tatgcaagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAAtt > 1:1899044‑M2/25‑68 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata < 1:4823728‑M2/50‑1 (MQ=255) caagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:507074‑M2/21‑70 (MQ=255) aagcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGAtata < 1:3329023‑M2/52‑1 (MQ=255) gcaccatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAg > 1:3627368‑M2/18‑70 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGca > 1:529928‑M2/16‑70 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGca > 1:4860779‑M2/16‑70 (MQ=255) accatcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGca > 1:1079571‑M2/16‑70 (MQ=255) catcatttactaaAACAAGTAAATAAACGAGAGAt < 1:279768‑M2/22‑1 (MQ=255) catcatttactaaAACAAGTAAATAAACGAGAGAt < 1:4115241‑M2/22‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg < 1:129621‑M2/37‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAgg < 1:3888068‑M2/37‑1 (MQ=255) atcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaac > 1:1607538‑M2/13‑70 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGa > 1:3068177‑M2/12‑35 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:1752063‑M2/34‑1 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:2891245‑M2/12‑61 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:107871‑M2/12‑61 (MQ=255) tcatttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:1588666‑M2/12‑61 (MQ=255) catttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:1912128‑M2/11‑71 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa < 1:4259012‑M2/61‑1 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaa > 1:3283447‑M2/10‑66 (MQ=255) atttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAAt < 1:259530‑M2/62‑1 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCaaa < 1:1072472‑M2/34‑1 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:698487‑M2/48‑1 (MQ=255) tttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:110173‑M2/48‑1 (MQ=255) ttactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:4528252‑M2/40‑1 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCttt > 1:3115508‑M2/7‑35 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:2471051‑M2/7‑67 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:5163556‑M2/7‑67 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:1768344‑M2/7‑67 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:3121456‑M2/7‑67 (MQ=255) tactaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaacaaa > 1:4131661‑M2/7‑67 (MQ=255) actaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGata > 1:2075‑M2/6‑55 (MQ=255) ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCaa < 1:5150085‑M2/40‑1 (MQ=255) ctaaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGAt > 1:1825983‑M2/5‑70 (MQ=255) taaAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGa < 1:314265‑M2/48‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGcaaa > 1:678731‑M2/2‑58 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACATATAGATcaca < 1:3050285‑M2/70‑1 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcaca > 1:3087461‑M2/2‑71 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcaca > 1:1729411‑M2/2‑71 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcaca > 1:602683‑M2/2‑71 (MQ=255) aAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATcac > 1:107929‑M2/2‑70 (MQ=255) aaCAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGc < 1:4441416/38‑1 (MQ=255) aaCAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGc < 1:1174971/38‑1 (MQ=255) aaCAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGc < 1:1811560/38‑1 (MQ=255) aaCAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGatat < 1:2797633/51‑1 (MQ=255) aaCAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAAt > 1:4943158/1‑62 (MQ=255) | GAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAACAAGTAAATAAACGAGAGATGACCTTTGCAAAAGGCAAAATTAAGATATAGCAAACAAATAGATCACA > W3110S.gb/3751730‑3751861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |