| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 48 (0.890) | 74 (1.760) +CGCGTACAACT |
37/78 | NT | 59.9% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 80 (1.480) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 201 total aligned reads displayed.
GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/235976‑236113 | ggTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGAc > 1:2238179/1‑69 (MQ=255) cctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAg < 1:134944‑M2/4‑1 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt > 1:3555870‑M2/65‑71 (MQ=255) ctgacgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCt < 1:3167770‑M2/7‑1 (MQ=255) cgctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa < 1:345096‑M2/11‑1 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:2962745‑M2/60‑70 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACa > 1:2163244‑M2/60‑70 (MQ=255) gctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACAt < 1:354939‑M2/12‑1 (MQ=255) tCTACCTGTTTAATCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACa > 1:1581847/1‑69 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:5122289‑M2/13‑1 (MQ=255) ctttttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:4704018‑M2/13‑1 (MQ=255) cTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:842668/70‑1 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:3269399‑M2/56‑64 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGa > 1:412407‑M2/56‑64 (MQ=255) tttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATaa < 1:2928592‑M2/14‑1 (MQ=255) ttatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt < 1:11273‑M2/16‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:3682110/68‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaa < 1:2843935/68‑1 (MQ=255) ccTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATa < 1:1752188/67‑1 (MQ=255) tatcgcaactctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGa > 1:2795271‑M2/54‑71 (MQ=255) tGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCt < 1:2576988/59‑1 (MQ=255) tGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATaaa > 1:3732766/1‑67 (MQ=255) tttAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGa > 1:329517/1‑59 (MQ=255) tAAGCATCTCTGGTAGACTTCCTGTAATT‑AATCGAACTGTAAAACGACAAGTCTGACATaaa > 1:4620785/1‑62 (MQ=255) aGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt < 1:921767/71‑1 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:2646234‑M2/44‑46 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCaa > 1:2183408‑M2/44‑46 (MQ=255) ctctactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTAt > 1:4072272‑M2/44‑68 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:3861599/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:2743643/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:2679224/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:3592361/1‑71 (MQ=255) tctGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCAc > 1:3946637/1‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCAc > 1:498559‑M2/41‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCAc > 1:1987296‑M2/41‑71 (MQ=255) tactgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGAACGCTATGCGCa > 1:1468937‑M2/41‑70 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGc < 1:3794801‑M2/29‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCa < 1:1237306‑M2/30‑1 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:4162642‑M2/39‑71 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:213088‑M2/39‑71 (MQ=255) ctgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg > 1:889665‑M2/39‑71 (MQ=255) tgtttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATa < 1:3051216‑M2/13‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGa < 1:570043/45‑1 (MQ=255) gTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt < 1:1074177/61‑1 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:923323‑M2/36‑71 (MQ=255) tttctccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCaa > 1:1925120‑M2/36‑71 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTAt < 1:3768697/60‑1 (MQ=255) tAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCaa < 1:2370950/71‑1 (MQ=255) gACTTCCTGTAATTGAATCGAACTGTAAAACGACaa > 1:58791/1‑36 (MQ=255) ccatacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTaca > 1:624415‑M2/31‑71 (MQ=255) catacccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTac < 1:1923041‑M2/40‑1 (MQ=255) ccTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:1493790/62‑1 (MQ=255) tacccgtttttttggacgcgtacaactCAAGTCTGACATAAAt > 1:2805833‑M2/28‑43 (MQ=255) gTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:4504243/1‑69 (MQ=255) cccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:4773999‑M2/26‑69 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATaaa > 1:312629‑M2/25‑39 (MQ=255) ccgtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAg < 1:4724158‑M2/47‑1 (MQ=255) gtttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:1928455‑M2/23‑66 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt > 1:2670082/1‑59 (MQ=255) aTTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAt < 1:2519866/71‑1 (MQ=255) tttttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTg < 1:1009138‑M2/33‑1 (MQ=255) tGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGc < 1:767518/54‑1 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAAt > 1:1273590‑M2/20‑35 (MQ=255) tttttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGt > 1:3651544‑M2/20‑71 (MQ=255) gAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg < 1:4415376/70‑1 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:315636/55‑1 (MQ=255) aaTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAAt < 1:3969569/55‑1 (MQ=255) tttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:4852224‑M2/53‑1 (MQ=255) aTCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCg > 1:2279838/1‑68 (MQ=255) ttggacgcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtc < 1:1874545‑M2/54‑1 (MQ=255) gAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:1319253/1‑70 (MQ=255) aCTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGAt < 1:3940456/71‑1 (MQ=255) cTGTAAATCGACAAGTCTGACATAAATGACCGCTATGAGc < 1:2444840/40‑1 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa > 1:1287198/1‑71 (MQ=255) cTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATa < 1:5027250/71‑1 (MQ=255) gcgtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTAc > 1:2998207‑M2/11‑71 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt > 1:1384739/1‑61 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAcc > 1:4335153/1‑70 (MQ=255) tAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCg < 1:4941262/71‑1 (MQ=255) gtacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:4040934‑M2/9‑71 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGtt < 1:4738923‑M2/53‑1 (MQ=255) tacaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCg > 1:724764‑M2/8‑70 (MQ=255) acaactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACcgc > 1:3099974‑M2/7‑69 (MQ=255) aaaCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGa > 1:2611128/1‑70 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTa > 1:1625558‑M2/6‑44 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:1206296‑M2/56‑1 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTcgc > 1:4790938‑M2/6‑62 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:796969‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1720803‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1392250‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:1523937‑M2/6‑71 (MQ=255) caactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGcaa > 1:2096026‑M2/6‑71 (MQ=255) aactCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTacac < 1:2873665‑M2/42‑1 (MQ=255) aCGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATAc > 1:1796295/1‑65 (MQ=255) gACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGcct < 1:2219153/48‑2 (MQ=255) ctCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGc > 1:2967902‑M2/3‑46 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc < 1:1776098‑M2/56‑1 (MQ=255) tCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAacca > 1:318893‑M2/2‑70 (MQ=255) aCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAaccac > 1:2042282/1‑71 (MQ=255) cAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTtctc > 1:5132606/1‑56 (MQ=255) | GGTGAAAATTTCTACCTGTTTAAGCATCTCTGGTAGACTTCCTGTAATTGAATCGAACTGTAAAACGACAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/235976‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |