| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 70 (1.290) | 41 (1.060) +AGGGTCCCTAAGTC |
23/72 | NT | 57.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 16 (0.300) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464813‑3464940 | ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:4989732‑M2/67‑71 (MQ=255)ccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa > 1:1923120‑M2/67‑70 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:5167731‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:3791290‑M2/8‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:4036044‑M2/8‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:2158451‑M2/6‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccataagtcTAAAACGa < 1:336086‑M2/8‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:454117‑M2/58‑71 (MQ=255) tgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:1019677‑M2/57‑70 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaa < 1:1320805‑M2/4‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg > 1:489923‑M2/56‑67 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAg > 1:3301248‑M2/56‑66 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:949098‑M2/52‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt > 1:2944713‑M2/52‑71 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:1919440/71‑1 (MQ=32) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt < 1:312995‑M2/22‑1 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:4227407‑M2/48‑56 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:3660991‑M2/48‑56 (MQ=255) aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:4547632‑M2/48‑61 (MQ=255) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:4011840/1‑71 (MQ=34) aTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:1088225/1‑71 (MQ=34) tttGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGc > 1:3165652/1‑71 (MQ=34) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:771932‑M2/7‑1 (MQ=255) tgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:1525185‑M2/40‑48 (MQ=255) tGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:3549968/1‑71 (MQ=34) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc < 1:1643818‑M2/6‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:5018743‑M2/8‑1 (MQ=255) gatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt > 1:4930755‑M2/39‑71 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGccc > 1:405046‑M2/38‑52 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGccc > 1:4513231‑M2/38‑52 (MQ=255) tgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:4298300‑M2/37‑71 (MQ=255) tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa < 1:4249441‑M2/16‑1 (MQ=255) agccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGt > 1:2862861‑M2/34‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGtt > 1:4473114‑M2/33‑71 (MQ=255) cTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt > 1:3901813/1‑71 (MQ=34) cgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1896567‑M2/7‑1 (MQ=255) cgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1208847‑M2/7‑1 (MQ=255) cgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:4972014‑M2/31‑46 (MQ=255) cAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:2336894/1‑55 (MQ=35) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAt > 1:3452246‑M2/29‑71 (MQ=255) aGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa > 1:2967700/1‑53 (MQ=35) caagttgtcataaagggtccctaagtcTAAAACTaaa < 1:2006566‑M2/10‑1 (MQ=255) caagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc < 1:5143835‑M2/23‑1 (MQ=255) gagaGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:3060765/49‑1 (MQ=35) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:871398‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:1484088‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGaa > 1:4683461‑M2/27‑35 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGt < 1:120198‑M2/18‑1 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:2003202‑M2/27‑49 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1329520‑M2/27‑71 (MQ=255) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCg > 1:3003824‑M2/23‑46 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg > 1:1740396‑M2/22‑68 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg < 1:3169286‑M2/50‑4 (MQ=255) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGc < 1:2714907/71‑1 (MQ=34) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:5167499/1‑42 (MQ=38) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:4603640/1‑42 (MQ=38) acaaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:4745898/1‑47 (MQ=38) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGAc < 1:1316637/36‑1 (MQ=40) aaacaaCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:2546776/1‑45 (MQ=38) ccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAg > 1:4338455‑M2/10‑39 (MQ=255) aacaacAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTccc < 1:4581050/71‑1 (MQ=34) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTa < 1:4537646‑M2/42‑1 (MQ=255) taagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt < 1:5167385‑M2/35‑1 (MQ=255) | CAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCC > W3110S.gb/3464813‑3464940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |