| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 75 (1.380) | 30/100 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
Only 100 of 145 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/575930‑576065 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1540131‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4773520‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:450038‑M2/1‑1 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2854970‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3141160‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:398342‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3510053‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2168770‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2189848‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3982105‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:1216158‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2334142‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3834430‑M2/71‑71 (MQ=255)atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagcgacttgttcgcaccttcct > 1:528680‑M2/71‑71 (MQ=255) ttatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2703301‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4197570‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2243900‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2709344‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:766468‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3043049‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:362716‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1638848‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4179458‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1422862‑M2/2‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4794460‑M2/2‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:368822‑M2/69‑69 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcaccttccTTa < 1:4032786‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:1181513‑M2/3‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:596842‑M2/4‑1 (MQ=255) atgaaccctgttctatggctcagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:4839105‑M2/4‑1 (MQ=255) aaccctgttctatggctacagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTAc > 1:830679‑M2/65‑71 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa < 1:1432357‑M2/6‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2279946‑M2/8‑1 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:2944352‑M2/61‑62 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:3468701‑M2/60‑63 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4274142‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:4224434‑M2/2‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg < 1:2173680‑M2/12‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:4218681‑M2/58‑69 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGc < 1:2388833‑M2/13‑1 (MQ=255) ctatgggtccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:664689‑M2/56‑61 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:1318209‑M2/2‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2818730‑M2/2‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:2008652‑M2/53‑55 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa < 1:2576966‑M2/18‑1 (MQ=255) gctccatatgacaaacatgatctcatatcatggacttgttcgcaccttccTTAGTACTGATGCAGCTAcag < 1:171217‑M2/21‑1 (MQ=255) gctccagatgacaaacatgatctcatataagggacttgttcgcaccttccTTAGTa > 1:3952764‑M2/51‑56 (MQ=255) tccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1701276‑M2/49‑54 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:1790390‑M2/47‑56 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:4445909‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:781846‑M2/25‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1557595‑M2/25‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:2363220‑M2/5‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:1386804‑M2/42‑47 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAg > 1:1773519‑M2/42‑56 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:4163999‑M2/5‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:968182‑M2/5‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccTTAGt < 1:3363026‑M2/5‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcctt > 1:3392477‑M2/39‑40 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2394299‑M2/4‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:36496‑M2/38‑41 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:1644277‑M2/38‑41 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTa > 1:4857965‑M2/36‑38 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAg > 1:3905761‑M2/36‑39 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:3602555‑M2/36‑62 (MQ=255) catgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:4649920‑M2/36‑62 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:811312‑M2/28‑54 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1614433‑M2/28‑54 (MQ=255) atatcagggacttgttcggaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:2244592‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:4968134‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:1818778‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt < 1:1103161‑M2/43‑1 (MQ=255) tatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttttt < 1:938644‑M2/46‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:4888439‑M2/31‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:2947977‑M2/44‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt > 1:3500801‑M2/24‑65 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:568032‑M2/24‑71 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:50561‑M2/24‑71 (MQ=255) agggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1221010‑M2/22‑48 (MQ=255) gggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1979468‑M2/25‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:3449799‑M2/25‑1 (MQ=255) gacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTg < 1:4773183‑M2/53‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAg < 1:2019484‑M2/55‑1 (MQ=255) cttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAg < 1:2399394‑M2/55‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2476216‑M2/26‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaa < 1:2911021‑M2/26‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:1801916‑M2/25‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGc < 1:1874186‑M2/31‑1 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:3054227‑M2/15‑47 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:1904898‑M2/15‑58 (MQ=255) tgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAt > 1:2697388‑M2/15‑63 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGccc > 1:1040215‑M2/14‑71 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGc > 1:1762162‑M2/14‑69 (MQ=255) ttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGcc < 1:2881529‑M2/32‑1 (MQ=255) ttcgcaccttccTTAGTACTGATGAAGCTACAGCAGAAATTGcc < 1:773416‑M2/32‑1 (MQ=255) cgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:4494372‑M2/11‑37 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCtttt < 1:5080767‑M2/62‑1 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTTTTAATTTTTTCATCGTGAGCCCTTTTTTTg < 1:4022549‑M2/66‑1 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCAt > 1:1958441‑M2/6‑54 (MQ=255) cttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTg < 1:4741618‑M2/66‑1 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTG > W3110S.gb/575930‑576065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |