| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 44 (0.750) | 48 (1.150) +AGGGTCCCTAAGTC |
18/72 | NT | 66.4% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 24 (0.410) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > W3110S.gb/3464879‑3464928 |||||||||||||| GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:1255106/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:1248634/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:5153104/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:5052301/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:1535211/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:472325/71‑1GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:4616943/71‑1 GCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:1645806/70‑1 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:916681/1‑65 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:2108528/1‑65 CGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:473544/1‑71 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA > 1:5026077/3‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA > 1:4127501/3‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA > 1:1506330/3‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA > 1:5539415/3‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:4393019/3‑61 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:1301629/2‑71 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:5242332/2‑71 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:5378587/2‑71 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAATACG < 1:2907529/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:5116744/71‑1 CCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAA < 1:752467/70‑1 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:2790214/1‑54 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGT > 1:4805126/1‑71 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG > 1:4331012/1‑70 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG > 1:4811709/1‑70 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAG > 1:5238972/1‑63 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:3389732/1‑62 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT > 1:2471922/1‑71 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:3882697/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:882322/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:3889393/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:3008126/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:1330044/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:2221412/1‑58 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:5346004/1‑58 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:5072804/1‑58 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAACTCTAAAACGAAAGGCCCAGTCTT < 1:2176153/71‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT < 1:4504045/69‑1 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT < 1:1581303/69‑1 AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:2176274/71‑1 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTT > 1:2769319/1‑69 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTT > 1:1887862/1‑69 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTT > 1:755627/1‑69 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTT > 1:5066876/1‑69 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT > 1:749055/1‑68 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA > 1:4286909/1‑63 GTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT > 1:4135162/1‑71 GAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT > 1:5303677/1‑69 GAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT > 1:3733104/1‑69 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT < 1:2162815/70‑1 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT < 1:1569556/70‑1 ATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT < 1:5507704/70‑1 TGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:4318336/71‑1 AGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:4740049/68‑1 CGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTT < 1:5417035/71‑1 GTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA < 1:2098476/71‑1 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC > 1:4197948/1‑62 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:2310797/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:2444901/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:27397/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:668361/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:670511/1‑36 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:712558/1‑36 AAGTTGTCATAAAGGGTACCTAAGTCTAAAACGAAA > 1:5278897/1‑36 AAGTTGTAATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:5368529/1‑36 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg < 1:3847089/70‑4 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGGCTTTCGACTGAGCCTTTCGTTTTATTTGAccg < 1:2253879/70‑4 TAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:5223410/52‑1 AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTT > 1:416888/1‑54 TCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT < 1:2401180/45‑1 AGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:4023383/1‑49 |||||||||||||| GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > W3110S.gb/3464879‑3464928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |