| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 29 (0.500) | 58 (1.280) +CGCGTACAACT |
20/78 | NT | 54.3% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 97 (1.660) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 116 total aligned reads displayed.
CACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCT > W3110S.gb/69992‑70130 | cACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccatc > 1:2108271/1‑71 (MQ=255)cACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACtccat < 1:324973/70‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:3258500‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:4894263‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:4981653‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:5035145‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:392941‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTcc < 1:3927447‑M1/3‑1 (MQ=255) gagaacgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTc < 1:2181857‑M1/2‑1 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa < 1:4284705‑M1/8‑1 (MQ=255) cgatctggcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa < 1:4634826‑M1/8‑1 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGATGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc < 1:542118/71‑1 (MQ=255) aGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAAc < 1:4630247/71‑1 (MQ=255) gggtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:341546‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAacgtg > 1:2475804‑M1/56‑67 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:4550421‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:2894360‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:3452812‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:5052614‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:357408‑M1/56‑69 (MQ=255) gcgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACggg > 1:1174355‑M1/56‑69 (MQ=255) cgtgtaattgcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTAt < 1:522394‑M1/17‑1 (MQ=255) acaGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCaaaaaaa > 1:702418/1‑63 (MQ=255) tCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa < 1:2057831/71‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa < 1:3312632‑M1/24‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa < 1:5130209‑M1/24‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGaaa < 1:4047024‑M1/24‑1 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAAc > 1:3288654‑M1/46‑70 (MQ=255) gcagtgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAAc > 1:3097568‑M1/46‑70 (MQ=255) aCTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAAc < 1:4201507/70‑1 (MQ=255) tGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAg > 1:4369315/1‑70 (MQ=255) tGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAg > 1:499909/1‑70 (MQ=255) tgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:1268501‑M1/42‑49 (MQ=255) tgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:5259392‑M1/42‑49 (MQ=255) tgctcatagcggtcatttatgtcagacttgagttgtacgcgTCCaaaaa > 1:4825826‑M1/42‑49 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTaga > 1:813234‑M1/40‑70 (MQ=255) ctcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTa < 1:1748695‑M1/29‑1 (MQ=255) tcatagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAA‑CGGGTATGgag > 1:474190‑M1/39‑58 (MQ=255) catagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTagagag < 1:3484027‑M1/34‑1 (MQ=255) atagcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTa > 1:4856204‑M1/37‑65 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:3586550‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:5175711‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:80628‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:113909‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:1677819‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCaaaaaaa < 1:317538‑M1/10‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:623250‑M1/16‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:1397376‑M1/16‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:3772590‑M1/16‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:5321989‑M1/16‑1 (MQ=255) agcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTa < 1:619006‑M1/16‑1 (MQ=255) gcggtcatttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGc < 1:2747098‑M1/38‑1 (MQ=255) gAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTTGAGAGTTg < 1:2071058/70‑1 (MQ=255) gAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg < 1:3231632/70‑1 (MQ=255) cggtcatttatgtcagacttgagttgtacgcgTCCAAAGAAACGGGTATGGAGAAACAGTAGAGAGTTGCg > 1:1752568‑M1/33‑71 (MQ=255) cggtcatttatgtcagacttgagttgtacgcgTCCAAAGAAACGGGTATGGAGAAACAGTAGAGAGTTGCg > 1:288656‑M1/33‑71 (MQ=255) cggtcatttatgtcagacttgagttgtacgcgTCCAAAGAAACGGGTATGGACAAACAGTAGAGAGTTGCg > 1:503679‑M1/33‑71 (MQ=255) aGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTg < 1:458765/69‑1 (MQ=255) catttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGTAGAAACAGTAGAGAGTTGCGATa < 1:4688132‑M1/42‑1 (MQ=255) catttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATa < 1:105080‑M1/42‑1 (MQ=255) atttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa > 1:939640‑M1/28‑71 (MQ=255) atttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaa > 1:4371157‑M1/28‑71 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAAGGGGTATGGAGAAACAGTAGAGAGTTGCgatataa > 1:1868360‑M1/27‑68 (MQ=255) tttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:3238456‑M1/27‑71 (MQ=255) tttatgtcagacttgacttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa > 1:5181849‑M1/27‑71 (MQ=255) ttatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa < 1:1592346‑M1/43‑1 (MQ=255) tatgtcagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg < 1:1654071‑M1/47‑1 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:3003114/1‑70 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGt > 1:4169859/1‑70 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:5532487/71‑1 (MQ=255) aTCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:1895496/71‑1 (MQ=255) aTCGACATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:3322342/1‑44 (MQ=255) cagacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAAc > 1:4214823‑M1/20‑44 (MQ=255) agacttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:1924193‑M1/53‑1 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:4410216‑M1/15‑60 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:3551278‑M1/15‑60 (MQ=255) ttgagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:4086800‑M1/15‑60 (MQ=255) aTCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:413138/46‑1 (MQ=255) aTCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagag < 1:4272679/46‑1 (MQ=255) gagttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa < 1:52706‑M1/59‑1 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:1824147/1‑36 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:4505879/1‑69 (MQ=255) cGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg > 1:3802847/1‑69 (MQ=255) gTTTCACTCCATCCAAAAAAACGGGTATGGAGaaa > 1:1626587/1‑35 (MQ=255) gttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc > 1:3827580‑M1/11‑71 (MQ=255) ttgtacgcgTCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt > 1:1937729‑M1/10‑64 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:5077204/1‑42 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:2001939/1‑42 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:2218453/1‑42 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:2748369/1‑42 (MQ=255) tCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTagagag > 1:3260888/1‑42 (MQ=255) catccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc > 1:3948526/1‑53 (MQ=255) atccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt < 1:2729437/71‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 1:641286/45‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 1:1147522/45‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATaa < 1:4914003/43‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:5307760/51‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:1141825/51‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:928205/51‑1 (MQ=255) tccaAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTc < 1:943453/51‑1 (MQ=255) | CACCGCCAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCT > W3110S.gb/69992‑70130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |