| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1209367 = | 11 (0.190) | 25 (0.640) | 11/68 | NT | 56.6% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 31 (0.790) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 156 total aligned reads displayed.
CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTA > W3110S.gb/1209297‑1209435 | cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:4826487‑M1/1‑71 (MQ=255)cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:5494274‑M1/1‑71 (MQ=255)cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:3940969‑M1/1‑71 (MQ=255)cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:2517008‑M1/1‑71 (MQ=255)cTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:650128‑M1/1‑71 (MQ=255) catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt < 1:2952380‑M1/2‑1 (MQ=255) catgttaaatccccctggtaaaagaaggaatgatgccatttgcttgttatttcttcattttcataaacgtt < 1:5150379‑M1/2‑1 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 1:3411065‑M1/66‑71 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt > 1:831765‑M1/66‑71 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:846495‑M1/7‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGtt < 1:4965980‑M1/6‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA < 1:2898109‑M1/71‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA < 1:1913429‑M1/71‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:4671472‑M1/1‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:5428717‑M1/1‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:4090322‑M1/1‑70 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG > 1:3013891‑M1/1‑70 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:2732823‑M1/56‑60 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt > 1:2611907‑M1/56‑60 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt < 1:4089330‑M1/2‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa < 1:1022918‑M1/14‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa < 1:3163822‑M1/14‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:2110923‑M1/15‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:1056834‑M1/15‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:2329477‑M1/15‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:59220‑M1/15‑1 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg < 1:432027‑M1/15‑1 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAG > 1:4277073‑M1/1‑69 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:4156262‑M1/18‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:3507389‑M1/18‑1 (MQ=255) ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg < 1:1633375‑M1/18‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:1256831‑M1/9‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:2704476‑M1/9‑1 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg < 1:1534988‑M1/9‑1 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:3259064‑M1/71‑6 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:3557150‑M1/71‑6 (MQ=255) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg < 1:4546866‑M1/70‑6 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:2820046‑M1/50‑70 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:236081‑M1/50‑70 (MQ=255) tcgATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:3312277‑M1/70‑11 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:4270618‑M1/71‑11 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:454747‑M1/71‑11 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta < 1:324736‑M1/71‑11 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:2485745‑M1/71‑15 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:4026084‑M1/71‑15 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg < 1:4059004‑M1/71‑15 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac > 1:5566098‑M1/1‑56 (MQ=255) atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac > 1:5392097‑M1/1‑56 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:4725893‑M1/40‑48 (MQ=255) tgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg > 1:4623566‑M1/40‑48 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:1408747‑M1/51‑1 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAG < 1:4051070‑M1/51‑1 (MQ=255) gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag < 1:4399585‑M1/33‑1 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:3553651‑M1/38‑71 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:4518698‑M1/38‑71 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:4018007‑M1/38‑71 (MQ=255) atgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca < 1:1300329‑M1/32‑1 (MQ=255) aaaTCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA > 1:4175193‑M1/1‑51 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA > 1:4988682‑M1/1‑51 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA > 1:2823974‑M1/1‑51 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT > 1:229523‑M1/1‑42 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:1977699‑M1/16‑1 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:2018637‑M1/16‑1 (MQ=255) ttgcttgttatttcttcattttaataaacgTTGGTTTGGGAGAAgg < 1:3690894‑M1/16‑1 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc < 1:5579594/56‑1 (MQ=255) tgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa < 1:3325402‑M1/42‑1 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa > 1:2906389/1‑71 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1846505‑M1/27‑52 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:150261‑M1/27‑52 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:2374056‑M1/27‑52 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1212984‑M1/27‑52 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTc > 1:1113068‑M1/27‑52 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:71602‑M1/71‑30 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttc < 1:2387350‑M1/71‑30 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACAt < 1:1027920‑M1/45‑1 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:3906158‑M1/1‑38 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:2385391‑M1/1‑38 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:4672008/1‑71 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:4335609/1‑71 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:3148639/1‑71 (MQ=255) aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa > 1:2100424/1‑71 (MQ=255) tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 1:1602520‑M1/39‑1 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc > 1:2233836‑M1/13‑49 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:4651405‑M1/36‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:1278821‑M1/36‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:1477123‑M1/36‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:1950275‑M1/36‑1 (MQ=255) ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa < 1:5410841‑M1/36‑1 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:3064088‑M1/61‑1 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt < 1:1665709‑M1/61‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa > 1:2036616/1‑35 (MQ=255) taaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCggtttaa < 1:4523520‑M1/63‑3 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAc < 1:464943‑M1/37‑1 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:944142‑M1/66‑1 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc > 1:4757311‑M1/5‑71 (MQ=255) aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGCTTTCATAGc > 1:3370756‑M1/5‑71 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:5094773/49‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:1846089/49‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:680751/49‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:71646/49‑1 (MQ=255) | CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTA > W3110S.gb/1209297‑1209435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |