| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 77 (1.320) | 20/100 | NT | 88.5% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 10 (0.170) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 131 total aligned reads displayed.
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412157‑2412293 | gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa > 1:2784699/1‑70 (MQ=31) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:5532359/71‑1 (MQ=34) aaGCCACTGGAGCACCTCAAAAACACCATCAAACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc > 1:4543657/1‑70 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAATTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:1513504/71‑1 (MQ=255) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGaat < 1:233670/71‑3 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:1840408/70‑1 (MQ=255) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACt < 1:561362/70‑1 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:4206490/57‑1 (MQ=35) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:1593943/57‑1 (MQ=35) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt > 1:2457338/1‑71 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt > 1:3313682/1‑71 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:1237302/65‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:426491/65‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:5537332/65‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2148461/65‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:5457218/65‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:4780575/65‑1 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTc > 1:4910455/1‑67 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg > 1:500770/1‑69 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:3119131/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:563025/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1056331/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:76099/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:4030210/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:5298859/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:48712/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1943315/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1612060/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:15640/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:1463690/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:5145164/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt < 1:3643278/69‑1 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:1111700/1‑71 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:4725496/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:3565388/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:3681152/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:1404007/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:1377915/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:1201061/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:5206679/47‑1 (MQ=40) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:5381061/47‑1 (MQ=40) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:131780/1‑71 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:5185830/1‑71 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:3785364/1‑71 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATaa > 1:251846/1‑71 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt > 1:3531877/1‑71 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt > 1:1714579/1‑71 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc > 1:2252409/1‑66 (MQ=255) cacTAAATCATTAAGTTGGCAGCATCACAAAAAAAGCGACTcaca < 1:564695/45‑1 (MQ=21) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa < 1:2289194/70‑1 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa < 1:3835917/70‑1 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa < 1:3295655/70‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:4329133/35‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:3668489/54‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat < 1:4550504/54‑1 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca > 1:970321/1‑71 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca > 1:336516/1‑71 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:5541417/1‑40 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:4991483/1‑40 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:3883661/1‑40 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:1627414/1‑40 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:2491714/1‑40 (MQ=255) tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:2603688/42‑1 (MQ=255) tAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:4688238/1‑71 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:2766075/1‑71 (MQ=255) ttGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc > 1:821737/1‑71 (MQ=255) ttGCCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATc > 1:5286980/1‑71 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:1703429/70‑1 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:921983/70‑1 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:4715109/70‑1 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCa < 1:524931/70‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:1085254/44‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:4795460/45‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:4764622/45‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:4331426/45‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:2363647/45‑1 (MQ=255) gcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:1762369/45‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATg < 1:657919/38‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1218223/1‑45 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa > 1:3844997/1‑71 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa > 1:4563820/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCGTGAAGTa > 1:67445/1‑44 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTa > 1:776274/1‑44 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:1085267/1‑58 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:2559570/1‑58 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:3151804/1‑58 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:3147300/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:974532/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:967682/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:1854722/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:376644/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:4040625/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:4637077/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:4931808/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:5175430/1‑56 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:2866141/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:1281474/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:4820006/1‑71 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:5273966/1‑46 (MQ=255) ccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:4075870/1‑46 (MQ=255) | GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCG > W3110S.gb/2412157‑2412293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |