| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 43 (0.740) | 35 (1.330) +TTTAATATCAGTAAACCGGACATAACC |
18/46 | NT | 63.7% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 46 (0.790) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 148 total aligned reads displayed.
TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124438‑4124572 | gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataacccacg > 1:590433‑M2/67‑68 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:4184734/1‑69 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:4861877/1‑69 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:2878644/1‑69 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:179013/1‑69 (MQ=255) gCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg > 1:2314704/1‑69 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaagaa > 1:3029464‑M2/62‑70 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:223146‑M2/61‑70 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1101897‑M2/12‑1 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:2909609‑M2/59‑71 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:1733439‑M2/59‑71 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcg > 1:4905118‑M2/57‑71 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcg > 1:5554634‑M2/57‑71 (MQ=255) aTGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTTGTCAGCATGAAGAAAAATCGCGCt > 1:371578/1‑70 (MQ=255) aTGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtt > 1:1880976/1‑71 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:5577951/71‑1 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:2068438/71‑1 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCCCttt < 1:2536160/71‑1 (MQ=255) gCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttt > 1:872685/1‑71 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:3972429‑M2/49‑64 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:4782063‑M2/25‑1 (MQ=255) ttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:2973297‑M2/25‑1 (MQ=255) tgcctctggcgatcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:559563‑M2/46‑70 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1920235‑M2/46‑70 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1909655‑M2/46‑70 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1423465‑M2/46‑70 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:4401633/71‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaagaa > 1:3527624‑M2/45‑53 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:4638899‑M2/25‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:120268‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:826069‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1635430‑M2/26‑1 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc > 1:5500963/1‑53 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc > 1:5323644/1‑53 (MQ=255) ttCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcgc > 1:2304433/1‑53 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:4466371‑M2/32‑1 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:4325017‑M2/38‑69 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:159512‑M2/36‑71 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:5416999/58‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:2619116/58‑1 (MQ=255) cacaGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:118706/58‑1 (MQ=255) gCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:2501444/56‑1 (MQ=255) gCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg < 1:2019761/56‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:3998105‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:4899598‑M2/29‑71 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2201986‑M2/29‑71 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:2362486‑M2/28‑39 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:4154278‑M2/28‑39 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:5599847‑M2/27‑60 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:3623753‑M2/35‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:726928‑M2/35‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:4839713‑M2/35‑1 (MQ=255) ttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:281269‑M2/35‑1 (MQ=255) taatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg < 1:3434250‑M2/43‑1 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:2312937‑M2/24‑66 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTa > 1:1515508‑M2/24‑68 (MQ=255) ggTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:1422773/1‑70 (MQ=255) ggTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTg > 1:1740218/1‑71 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:5081449‑M2/19‑42 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:5503027‑M2/19‑42 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:3611192‑M2/19‑42 (MQ=255) agtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:1334036‑M2/19‑42 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:4716338/1‑53 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:3104148/1‑53 (MQ=255) gtAATCAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:4989990/1‑53 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:312785/40‑1 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:5399925/48‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga < 1:4121519‑M2/57‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:4463929‑M2/15‑71 (MQ=255) accggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:2569384‑M2/14‑45 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:4044781/1‑41 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2153851/1‑41 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:2859812/1‑41 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:1152850‑M2/59‑1 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:788241‑M2/59‑1 (MQ=255) ccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:1872898‑M2/13‑70 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:670975‑M2/59‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:2113024/70‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3186243/40‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:4291015/40‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3626526/40‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:3175782/40‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc < 1:160574/41‑1 (MQ=255) ttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga < 1:730082/68‑1 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:3725485‑M2/65‑1 (MQ=255) agtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:4661051/1‑49 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:4678564‑M2/59‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGGAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:2437100/70‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:4780538/70‑1 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCaa > 1:4408595‑M2/4‑45 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:5109175/1‑71 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:5541574/1‑71 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:2586931/1‑71 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:541489/1‑71 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:280363‑M2/2‑68 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2730663‑M2/2‑68 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:5574521‑M2/2‑68 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:1509347‑M2/2‑68 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:2569706‑M2/2‑68 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:867584‑M2/2‑68 (MQ=255) | TGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124438‑4124572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |