| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 20 (0.340) | 10/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 133 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932864‑3932998 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:1921086‑M2/1‑70 (MQ=255)atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGtgt > 1:2276773‑M2/67‑70 (MQ=255)atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa > 1:82394‑M2/67‑71 (MQ=255)atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa > 1:2518047‑M2/67‑71 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:1802900‑M2/6‑1 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:2212555‑M2/6‑1 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:4974433‑M2/6‑1 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:2945841‑M2/7‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:1584544‑M2/7‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:588881‑M2/7‑2 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:2878291‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:5408687‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:1690425‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:5558426‑M2/6‑1 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:1109654‑M2/6‑1 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:4018046‑M2/8‑1 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:1061241‑M2/8‑1 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:1736519‑M2/7‑2 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:415491‑M2/71‑6 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:4402740‑M2/71‑6 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2686840‑M2/71‑6 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:2493449‑M2/8‑1 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:5568939‑M2/63‑68 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:306742‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:484489‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:2780921‑M2/63‑68 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:1744833‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:543152‑M2/63‑68 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:1981386‑M2/63‑68 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:4873100‑M2/9‑1 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg > 1:2329274‑M2/61‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:2654721‑M2/53‑69 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:4060181‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:5095894‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:4523839‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:4664511‑M2/53‑71 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:3008893‑M2/70‑16 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:5337579‑M2/70‑16 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:2212039‑M2/1‑52 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:2019763‑M2/1‑51 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:4851839‑M2/1‑50 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:5160344‑M2/1‑50 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1277964‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:3814626‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:4372141‑M2/29‑1 (MQ=255) tttactcacttagccgcgtggccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:39760‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:3796916‑M2/1‑46 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:4930305‑M2/1‑44 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:3045724‑M2/1‑44 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:3621213‑M2/36‑64 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:248660‑M2/36‑71 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcct < 1:1959530‑M2/70‑33 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaa > 1:2597093‑M2/1‑37 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:2412792‑M2/1‑37 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:2950191‑M2/1‑37 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:1060550‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4427533‑M2/33‑70 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2783708‑M2/33‑70 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:3695184‑M2/32‑69 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:4821196‑M2/32‑69 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCGCGGGCCTCGCTGAAAAGTggg < 1:448468‑M2/29‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:3635351‑M2/29‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1338061‑M2/29‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:3143268‑M2/71‑40 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggt < 1:350777‑M2/71‑42 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggt < 1:4142477‑M2/71‑42 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1546871‑M2/25‑70 (MQ=255) tgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1652750‑M2/25‑70 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1799731‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1244415‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:5362851‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:5026551‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:5016896‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2791661‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:3255507‑M2/48‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:2031217‑M2/48‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1803985‑M2/22‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:4878970‑M2/49‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTAGCTGaa < 1:714861‑M2/22‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2842540‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:3081620‑M2/18‑68 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:2562522‑M2/18‑68 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:3508597‑M2/17‑40 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:4307771‑M2/17‑40 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:2983578‑M2/17‑40 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:3455463‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:4865898‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:1773026‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:3338123‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:1313345‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:3164623‑M2/54‑1 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:2029635‑M2/15‑71 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:2820601‑M2/14‑71 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat > 1:1248584‑M2/1‑15 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga < 1:1106359‑M2/52‑39 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCtt > 1:4618867‑M2/10‑69 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAACCCTATAcc > 1:4328815‑M2/6‑63 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:4137026‑M2/3‑71 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:3342622‑M2/48‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc < 1:3764914/43‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932864‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |