| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 33 (1.450) | 9 (0.560) +AGGGTCCCTAAGTC |
8/70 | NT | 39.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 6 (0.260) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
AGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71206‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGA > W3110S.gb/3464879‑3464925 |||||||||||||| AGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT > 1:1268716/1‑69 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATCATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA < 1:1702022/68‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTTGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:1600478/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGACGTCAAGTTGTCATAAAGGGTCCCTAA < 1:1996777/61‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1208962/71‑1 GTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:791774/1‑54 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCT > 1:433824/1‑71 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG > 1:1134486/1‑40 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT < 1:1597698/71‑1 GAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG > 1:192446/1‑39 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG > 1:1624050/1‑35 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAG > 1:1626696/1‑35 AATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAG > 1:424941/1‑71 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCC < 1:1805813/42‑1 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCC > 1:179661/1‑58 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA > 1:2007002/1‑42 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTT > 1:746340/1‑41 TAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:285188/40‑1 TAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:1171518/40‑1 TAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGA > 1:1897898/1‑53 |||||||||||||| AGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71206‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGA > W3110S.gb/3464879‑3464925 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |