| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 3 (0.130) | 23 (1.080) | 19/92 | NT | 89.1% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCG > W3110S.gb/2018502‑2018641 | gtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1158530‑M1/70‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:1763562‑M1/69‑71 (MQ=255) tgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:1397042‑M1/69‑71 (MQ=255) cGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGc > 1:272548/1‑71 (MQ=255) gagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCg > 1:2047205‑M1/66‑70 (MQ=255) agtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg < 1:2054826‑M1/2‑1 (MQ=255) tgatCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATc > 1:1362362/1‑71 (MQ=255) ttcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:2187489‑M1/60‑61 (MQ=255) ttcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1849478‑M1/60‑61 (MQ=255) ttcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgg > 1:1336331‑M1/60‑61 (MQ=255) ttcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATcc > 1:144291‑M1/60‑68 (MQ=255) cTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC > 1:279510‑M1/1‑71 (MQ=255) cTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC > 1:2096911‑M1/1‑71 (MQ=255) cTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAC > 1:439100‑M1/1‑71 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATccc < 1:1686271/66‑1 (MQ=255) cggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc < 1:2015244‑M1/16‑1 (MQ=255) cggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTc < 1:448084‑M1/16‑1 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa < 1:1110903‑M1/18‑1 (MQ=255) cGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataag < 1:1386622‑M1/71‑6 (MQ=255) tgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGAt > 1:383252/1‑56 (MQ=255) cgttaattcttatctggcgtaataccacaacccttaagttagcgcttatgg > 1:2056327‑M1/50‑51 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATccc < 1:462266‑M1/10‑1 (MQ=255) aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTggcg < 1:126056‑M1/26‑1 (MQ=255) catatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:556607‑M1/13‑1 (MQ=255) catatcaggcgtaatacaacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:559138‑M1/13‑1 (MQ=255) atatcaggcgtaataccacaacccttaagttagcgcttatg < 1:1070916‑M1/1‑1 (MQ=255) atatcaggcgtaataccacaacccttaagttagcgcttatg < 1:405635‑M1/1‑1 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatggg > 1:2003718‑M1/40‑42 (MQ=255) aggcgtaataccacaacccttaagttagcgcttatGGGCGATcc < 1:68164‑M1/9‑1 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:1422996‑M1/35‑71 (MQ=255) cgcTACCTTAAGTTTGCATGGCTGGCGCTTG‑GGGGCGATCCCACCataagcgctaacttaagggttgaacc < 1:1309219‑M1/71‑27 (MQ=255) gcTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaacc < 1:1774015‑M1/71‑27 (MQ=255) cgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtctc < 1:69517‑M1/39‑1 (MQ=255) aataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgc < 1:723096‑M1/42‑1 (MQ=255) aCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatc > 1:1274734‑M1/1‑42 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTg < 1:304179‑M1/30‑1 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:1985391‑M1/25‑71 (MQ=255) cacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:547909‑M1/25‑71 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:2181080‑M1/1‑37 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg < 1:2070858‑M1/47‑1 (MQ=255) aGTTTGCATGGCTGGAGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaag > 1:1287668‑M1/1‑36 (MQ=255) gTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaa < 1:2175068‑M1/71‑37 (MQ=255) ttGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:609355‑M1/1‑33 (MQ=255) acccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:634742‑M1/21‑52 (MQ=255) acccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAgg < 1:72094‑M1/51‑1 (MQ=255) cccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGc > 1:1164142‑M1/20‑71 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:389405‑M1/70‑40 (MQ=255) cATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcg < 1:1214275‑M1/70‑41 (MQ=255) aTGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgac < 1:369810‑M1/71‑43 (MQ=255) aagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtct < 1:1335915‑M1/57‑1 (MQ=255) ttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGa > 1:970201‑M1/12‑59 (MQ=255) tagcgcttatGGGCGATCCCACCCTCCATCCTGTCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGa < 1:258542‑M1/60‑1 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc < 1:1489532‑M1/69‑48 (MQ=255) gcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc > 1:1336976‑M1/7‑70 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc > 1:6703‑M1/1‑19 (MQ=255) ttGCGGGGCGATCCCACCataagcgctaacttaagggttg < 1:988338‑M1/40‑23 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtg > 1:497062‑M1/3‑70 (MQ=255) GGGCGATCCCACCCTCCATCCTGGCGGCTTTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCg < 1:1476367‑M1/71‑1 (MQ=255) | CCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCG > W3110S.gb/2018502‑2018641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |