| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3750592 | 1 (0.040) | 34 (1.630) | 23/90 | NT | 98.7% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750522‑3750662 | tCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:1063679‑M1/71‑1 (MQ=255) cTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:1097322‑M1/1‑68 (MQ=255) tatTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1532896‑M1/1‑61 (MQ=255) atTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:823746‑M1/1‑60 (MQ=255) tGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaa > 1:175409‑M1/1‑52 (MQ=255) gCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataacga > 1:1843323‑M1/1‑51 (MQ=255) gCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:1166000‑M1/1‑51 (MQ=255) cTATACTGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaa > 1:4665‑M1/1‑50 (MQ=255) tataCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagat > 1:1512581‑M1/1‑49 (MQ=255) taCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga > 1:434307‑M1/1‑47 (MQ=255) aCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgaga < 1:1531604‑M1/65‑20 (MQ=255) aCCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaa > 1:2159631‑M1/1‑46 (MQ=255) ccGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacga > 1:750129‑M1/1‑45 (MQ=255) aTTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAA < 1:139700‑M1/42‑1 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:2219683‑M1/1‑41 (MQ=255) ttAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttg > 1:595583‑M1/1‑41 (MQ=255) aaTTCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatga > 1:803757‑M1/1‑39 (MQ=255) ttCGCCAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaa < 1:1108906‑M1/71‑35 (MQ=255) cAGATATATATGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggc < 1:782430‑M1/70‑39 (MQ=255) gATATATATGCAAGCACCATCATTTACTAAaagaagtaaataaacgagagatgacctttgcaaaaggcaa > 1:1624619‑M1/1‑30 (MQ=255) atatatatGCAAGCACCATCATTTACTAAaacaagtaaata < 1:1906362‑M1/41‑13 (MQ=255) tatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:1692815‑M1/1‑28 (MQ=255) tatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:1069580‑M1/1‑28 (MQ=255) tatatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagaga > 1:85417‑M1/1‑28 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:1679227‑M1/1‑27 (MQ=255) atatatGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaat > 1:1370986‑M1/1‑27 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaa < 1:2167619‑M1/36‑11 (MQ=255) tatatGCAAGCACCATCATTTACTAAaacaagtaaa < 1:2165035‑M1/36‑11 (MQ=255) atatGCAAGCACCATCATTTACTAAaacaagtaaa > 1:1294258‑M1/1‑25 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:146471‑M1/1‑23 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:401041‑M1/1‑23 (MQ=255) atGCAAGCACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaatt > 1:1992242‑M1/1‑23 (MQ=255) tGCAAGCACCATCATTTACTAAaacaagtaaataaa > 1:949597‑M1/1‑22 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat > 1:1159039‑M1/1‑16 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:2150807‑M1/1‑16 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:761580‑M1/1‑16 (MQ=255) cACCATCATTTACTAAaacaagtaaataaacgagagatgacctttgcaaaag > 1:747770‑M1/1‑16 (MQ=255) atcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagaaaac > 1:313544‑M1/1‑12 (MQ=255) tcatTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaa > 1:775237‑M1/1‑11 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:1981056‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:82429‑M1/1‑9 (MQ=255) atTTACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:1665677‑M1/1‑9 (MQ=255) ttACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaa > 1:200265‑M1/1‑7 (MQ=255) ttACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGt > 1:138991/1‑70 (MQ=31) tACTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat > 1:885376‑M1/1‑6 (MQ=255) aCTAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagat > 1:1076601‑M1/1‑5 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca > 1:762720‑M1/1‑3 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatca > 1:195564‑M1/1‑3 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaata < 1:1606406‑M1/66‑64 (MQ=255) tAAaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatag < 1:1869245‑M1/56‑54 (MQ=255) aaaacaagtaaataaacgagagatgacctttgcaaaag > 1:377639‑M1/1‑2 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca < 1:1753921‑M1/71‑71 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:79772‑M1/1‑1 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca < 1:1763748‑M1/71‑71 (MQ=255) aaacaagtaaataaacgagagatgacctttgcaaaaggcaaaattaagatatagcaaacaaatagatcaca > 1:2063201‑M1/1‑1 (MQ=255) | TCCCTGTGAATATTACATCTGCTATACCGATTAATTCGCCAGATATATATGCAAGCACCATCATTTACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT > W3110S.gb/3750522‑3750662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |