| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 17 (0.750) | 5 (0.500) +TTTAATATCAGTAAACCGGACATAACC |
4/44 | NT | 34.7% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 26 (1.150) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
GAGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124434‑4124572 | gAGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGc < 1:946645/71‑1 (MQ=255)gAGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGc < 1:944085/71‑1 (MQ=255) cTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATg < 1:1997113/67‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa > 1:1061045‑M2/60‑71 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:542085/71‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa > 1:915696/1‑71 (MQ=255) cgcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc < 1:1513744/71‑1 (MQ=255) gcTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATcg > 1:2169221/1‑71 (MQ=255) ggATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCgcgc > 1:1229603/1‑71 (MQ=255) ggATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCgcgc > 1:1269158/1‑71 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt > 1:1838683/1‑71 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt > 1:1095853/1‑71 (MQ=255) gCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttt > 1:1444443/1‑71 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAAt > 1:1122193/1‑61 (MQ=255) tGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATc < 1:257328/61‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:807046‑M2/24‑1 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCt > 1:45612‑M2/46‑64 (MQ=255) tgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:112919‑M2/46‑70 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTg < 1:1539858/70‑1 (MQ=255) tCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGa < 1:1967220/71‑1 (MQ=255) cTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa > 1:186609/1‑51 (MQ=255) tctcCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1241722/70‑1 (MQ=255) tctcAACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1541379/70‑1 (MQ=255) cgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:1709‑M2/35‑1 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCt > 1:1695694‑M2/33‑51 (MQ=255) aatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:1831549‑M2/40‑1 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:1670713‑M2/28‑61 (MQ=255) ccGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGt < 1:1403725/71‑1 (MQ=255) gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:1027370/1‑59 (MQ=255) gaAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:2060299/1‑59 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg < 1:1512666‑M2/25‑1 (MQ=255) gtgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc < 1:1781756/65‑1 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:1326560/1‑47 (MQ=255) tAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg < 1:601010/71‑1 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:1424651‑M2/15‑71 (MQ=255) aTTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgat > 1:1300578/1‑71 (MQ=255) tagttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:1640925/1‑71 (MQ=255) ggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCa < 1:920220‑M2/41‑1 (MQ=255) agttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtg > 1:2005036/1‑66 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg < 1:911316‑M2/31‑1 (MQ=255) ataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAtt > 1:1444317‑M2/7‑70 (MQ=255) agtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAtt < 1:1086765/70‑1 (MQ=255) taaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg < 1:2044602‑M2/35‑1 (MQ=255) gtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTa < 1:1392859/70‑1 (MQ=255) tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTggg < 1:133062/36‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGAGATTaaa > 1:44240‑M2/5‑71 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:1691933‑M2/4‑37 (MQ=255) accCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:1972639‑M2/4‑41 (MQ=255) ccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAc > 1:1880306‑M2/3‑70 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:675268/1‑39 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAg > 1:1175380/1‑37 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGata > 1:227222/1‑64 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:394463/1‑71 (MQ=255) aGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg > 1:1037680/1‑71 (MQ=255) | GAGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACG > W3110S.gb/4124434‑4124572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |