| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 14 (0.620) | 10/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATC > W3110S.gb/3932864‑3932994 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCAACACCGAAGTGt > 1:958355‑M2/1‑70 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:1794363‑M2/7‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt > 1:1586773‑M2/65‑70 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:434608‑M2/71‑4 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:426628‑M2/71‑4 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1743222‑M2/1‑68 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:1710984‑M2/71‑4 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:1486236‑M2/8‑1 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:381173‑M2/1‑66 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:324921‑M2/9‑4 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:1982982/1‑65 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTCtgatc < 1:1426734‑M2/70‑6 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:523481‑M2/70‑7 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:306590‑M2/11‑1 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:10964‑M2/65‑4 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:205195‑M2/54‑71 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:1925754‑M2/54‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg > 1:1067059‑M2/53‑69 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCg < 1:1640744‑M2/17‑1 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgttcctacccacgt < 1:228608‑M2/70‑16 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:1470418‑M2/70‑18 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:1840431‑M2/70‑18 (MQ=255) tgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa > 1:746669‑M2/49‑70 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1098130‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaa < 1:58224‑M2/23‑1 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt > 1:1274227‑M2/46‑71 (MQ=255) gtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1289650‑M2/22‑1 (MQ=255) gtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTgg < 1:585638‑M2/28‑1 (MQ=255) cGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac > 1:1314527‑M2/1‑47 (MQ=255) cGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac > 1:1276241‑M2/1‑47 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:358907‑M2/1‑46 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:666198‑M2/1‑45 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:663696‑M2/1‑45 (MQ=255) ttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:493705‑M2/1‑43 (MQ=255) actcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:405656‑M2/40‑63 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:1304148‑M2/1‑42 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTTATCCCGGGCCTCGCTGAAAAGTGGTAAGTCAg > 1:1719966‑M2/36‑71 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1228481‑M2/1‑38 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:219404‑M2/33‑42 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAg < 1:1365541‑M2/41‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1767633‑M2/42‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1549949‑M2/1‑32 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGTCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:1427603‑M2/40‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1551749‑M2/48‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGACTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:395787‑M2/48‑1 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:1529443‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:1811010‑M2/21‑71 (MQ=255) actattgctgggtaagatcAGTTATCCCGGGCCTCGCTGAAAAGTGGGa < 1:730446‑M2/30‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:888454‑M2/48‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1292290‑M2/52‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:676795‑M2/22‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCt < 1:292566‑M2/53‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:230263‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:1320802‑M2/55‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:897450‑M2/54‑1 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:254834‑M2/14‑65 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:1771898‑M2/12‑35 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:334402‑M2/42‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:2042605‑M2/29‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:197830‑M2/8‑71 (MQ=255) aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:2091071‑M2/7‑48 (MQ=255) aagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATc > 1:1716600‑M2/7‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:1632208‑M2/38‑1 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1337033‑M2/52‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATC > W3110S.gb/3932864‑3932994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |