| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1180217 | 87 (1.260) | 4 (0.060) | 3/100 | NT | 4.7% | coding (319/996 nt) | gapA | glyceraldehyde‑3‑phosphate dehydrogenase A |
| ? | minE | = 1180254 | 78 (1.180) | coding (356/996 nt) | gapA | glyceraldehyde‑3‑phosphate dehydrogenase A | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1180146‑1180217‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTACGAGCAGTTTCGTCAGTCAGGAACAGACC < minE/1180254‑1180190 TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCT > 1:1258264/1‑71TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCT > 1:232647/1‑71TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCT > 1:2488040/1‑71TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCT > 1:2491537/1‑71TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGACTGTTCCTGACTGACGAAACTGCT > 1:3723539/1‑71 GAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTC > 1:1445277/1‑71 GAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTC > 1:876212/1‑71 AAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTCATAACCACTTTCTTCGCACCAGCGGTGATGTGTT < 1:3660693/70‑1 GCAACTGGTCTGTTCCTGACTGACGAAACTGCTCATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTAC < 1:1991696/71‑1 ACTGGTCTGTTCCTGACTGACGAAACTGCTCATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTAC > 1:1086346/1‑68 ACTGGTCTGTTCCTGACTGACGAAACTGCTCATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTAC > 1:1090971/1‑68 TCATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTACGAGCAGTTTCGTCAGTCAGGAACAGACC < 1:3571023/67‑1 TGAAATGGGACGAAGTTGGTGTTGACGTTGTCGCTGAAGCAACTGGTCTGTTCCTGACTGACGAAACTGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1180146‑1180217‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcATAACCACTTTCTTCGCACCAGCGGTGATGTGTTTACGAGCAGTTTCGTCAGTCAGGAACAGACC < minE/1180254‑1180190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |