| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1881475 | 51 (0.740) | 4 (0.060) | 3/94 | NT | 7.3% | coding (1659/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | minE | = 1881494 | 56 (0.900) | coding (1640/2235 nt) | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase | |||||
CGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGCTTCT > minE/1881426‑1881562 | cGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACc > 1:2274317‑M2/1‑69 (MQ=255)cGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACc < 1:1752131‑M2/70‑2 (MQ=255) cTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgc < 1:2607089/71‑1 (MQ=255) cGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACc > 1:571692‑M2/1‑62 (MQ=255) cGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgccg > 1:1380650/1‑71 (MQ=255) cGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgcc > 1:1141017/1‑70 (MQ=255) ttaAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCaa > 1:2169518/1‑71 (MQ=255) aaaTTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACc < 1:3227970‑M2/54‑2 (MQ=255) aaaTTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgccgc > 1:891206/1‑63 (MQ=255) aaaTTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACt > 1:592243/1‑71 (MQ=255) tGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtc > 1:3277999/1‑71 (MQ=255) gCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtc > 1:1375828/1‑70 (MQ=255) gCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtc < 1:3330132/70‑1 (MQ=255) cGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtc < 1:3043380/69‑1 (MQ=255) ttGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCTCCACCAATCGCCGCCAGCAACTCGTCGAcat > 1:2062082/1‑71 (MQ=255) ttGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGAcat > 1:2778189/1‑71 (MQ=255) ttGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGAcat > 1:2499130/1‑71 (MQ=255) ttGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGAcat > 1:707304/1‑71 (MQ=255) cAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGAcatcat < 1:3902300/71‑1 (MQ=255) aGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAg < 1:2556527/71‑1 (MQ=255) aGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAg > 1:2712486/1‑71 (MQ=255) aGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAg < 1:2447934/71‑1 (MQ=255) aGTTCACCATCTGATTGAGACGGATATCC‑‑GCCACcaatc < 1:1557168‑M2/39‑6 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgccgc < 1:1187193/45‑1 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgccgc < 1:748525/45‑1 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGc < 1:1642890/49‑1 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTg < 1:3317249/67‑1 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTg < 1:2440394/67‑1 (MQ=255) gTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGt < 1:1924730/71‑1 (MQ=255) ttCACCATCTGATTGAGACGGATATCCCCGCCACCAATcgccgc < 1:2914119/44‑1 (MQ=255) ttCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtcg < 1:3183116/57‑1 (MQ=255) ttCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACtcgtcg < 1:1172983/57‑1 (MQ=255) cACCATCTGATTTAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGAc > 1:246092/1‑57 (MQ=255) cACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAg > 1:3863168/1‑45 (MQ=255) ccATCTGATTGAGACGGATATCTCCGCCACCAATCGCCGCCAGCAACTCGTCGa > 1:509303/1‑54 (MQ=255) ccATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGa > 1:2156821/1‑54 (MQ=255) aTCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcg > 1:2456088/1‑71 (MQ=255) aTCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcg > 1:1872677/1‑71 (MQ=255) gATTGAGACGGATATCCCCGCCACcaatcagatggtgaacttcctgcaatcgcaatttaataagcc > 1:2301837‑M2/1‑24 (MQ=255) gATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCgg > 1:2932236/1‑70 (MQ=255) aTTGAGACGGATATCCCCGCCACcaatcagatggtgaacttcctgcaatcgcaatttaataagccg > 1:3490429‑M2/1‑23 (MQ=255) aTTGAGACGGATATCCCCGCCACcaatcagatggtgaacttcctgcaatcgcaatttaataagccg > 1:1961226‑M2/1‑23 (MQ=255) aTTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGa > 1:2388148/1‑47 (MQ=255) aTTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcgcg < 1:1746495/68‑1 (MQ=255) aTTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcgcg < 1:606264/68‑1 (MQ=255) aTTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcgcg < 1:1453372/68‑1 (MQ=255) aTTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCgg > 1:2909191/1‑69 (MQ=255) ttGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGgcag < 1:2129889/71‑1 (MQ=255) gagaCGGATATCCCCGGCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTg < 1:1173698/58‑1 (MQ=255) agaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcgcg < 1:599238/64‑1 (MQ=255) agaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAcgcg < 1:41752/64‑1 (MQ=255) gaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGa > 1:2464079/1‑42 (MQ=255) gaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGa > 1:128673/1‑42 (MQ=255) gaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGgcag > 1:1121393/1‑67 (MQ=255) gaCGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGgcag > 1:2211245/1‑67 (MQ=255) cGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGgcagca < 1:2685498/67‑1 (MQ=255) cGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATg > 1:2238541/1‑71 (MQ=255) ggATATCCCCGCCACcaatcagatggtgaacttcctgcaatcgcaatttaataagccgagtgccgaagagc > 1:373766‑M2/1‑15 (MQ=255) ggATATCCCCGCCACCAATCGCCGCCAGCAACtcgtcg < 1:3044153/38‑1 (MQ=255) ggATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGt < 1:491259/71‑1 (MQ=255) atatCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGttt > 1:445736/1‑71 (MQ=255) tatCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAc < 1:3141899/54‑1 (MQ=255) tatCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAAc < 1:307032/54‑1 (MQ=255) tatCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGtttt < 1:985170/71‑1 (MQ=255) tatCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGtttt < 1:2664091/71‑1 (MQ=255) atCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGtt < 1:1301776/48‑1 (MQ=255) atCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGtt < 1:1228563/48‑1 (MQ=255) tCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGttttt < 1:1537151/70‑1 (MQ=255) tCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGttttt < 1:1188268/70‑1 (MQ=255) tCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGttttt < 1:873562/70‑1 (MQ=255) ccGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGc < 1:2173852/71‑1 (MQ=255) ccGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGc > 1:3582478/1‑71 (MQ=255) gCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGctt > 1:3763786/1‑71 (MQ=255) gCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGctt > 1:1958013/1‑71 (MQ=255) gCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGct > 1:222612/1‑70 (MQ=255) ccaccaATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGcttc > 1:3929421/1‑71 (MQ=255) caccaATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGcttct < 1:3031297/71‑1 (MQ=255) caccaATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGcttct < 1:25510/71‑1 (MQ=255) ccaATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGt < 1:3859295/40‑1 (MQ=255) | CGGCACTCGGCTTATTAAATTGCGATTGCAGGAAGTTCACCATCTGATTGAGACGGATATCCCCGCCACCAATCGCCGCCAGCAACTCGTCGACATCATTGAAGTTGTAACGCGGCAGCAGATGTTTTTCTGCTTCT > minE/1881426‑1881562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |