New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | minE | = 95243 | 93 (1.550) | 9 (0.190) +TGATCCGGTA |
3/78 | NT | 10.3% | coding (2225/2706 nt) | secA | preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon |
? | minE | = 2270306 | 105 (1.750) | coding (25/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
TGAGCGCATTCTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/95226‑95243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACACATTTGGCATTGATCA < minE/2270306‑2270287 |||||||||| acAGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTG < 1:1377323/42‑1 AGCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGAT > 1:1109193/1‑44 GCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGAT > 1:1367005/1‑43 GCGCATTCTGGCGCATGATCCGGTAAACACGTTTGGC > 1:2980975/1‑37 TTCTGGCGCATGATCCGGTAAACACGTTTGTCATTGATCg < 1:1093956/40‑2 TTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCg < 1:2024873/40‑2 TTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCg < 1:2891184/40‑2 TTCTGGCGCATGATCCGGTAAACACGTTTGGCATTGATCg < 1:3798034/40‑2 TGGCGCATGATCCGGTAAACACGTTTGGCATTGAT > 1:721638/1‑35 |||||||||| TGAGCGCATTCTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/95226‑95243 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACACATTTGGCATTGATCA < minE/2270306‑2270287 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |