| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | minE | 2,018,222 | Δ3 bp | 10.0% | coding (108‑110/1164 nt) | yqhD → | alcohol dehydrogenase, NAD(P)‑dependent |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2018225 = | 43 (0.720) | 4 (0.080) | 3/84 | NT | 10.0% | coding (111/1164 nt) | yqhD | alcohol dehydrogenase, NAD(P)‑dependent |
| ? | minE | = 2018221 | 35 (0.680) | coding (107/1164 nt) | yqhD | alcohol dehydrogenase, NAD(P)‑dependent | |||||
AATTCCAGCACGTCCATGCCTTTCAGGGCATCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2018299‑2018225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgTAGGTAATCAATACGCGAGCATCGTGAGGAATTTGTTCGCGTAAACCAGCGATTGCGCCTTTACCA < minE/2018221‑2018156 AATTCCAGCACGTCCATGCCTTTCAGGGCATCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCC > 1:1737215/1‑71AATTCCAGCACGTCCATGCCTTTCAGGGCATCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCC > 1:929961/1‑71 TCAGGGCATCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCCGC > 1:1988300/1‑51 TCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCCGC < 1:870453/43‑1 GAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCCGCCGTAGGTAATCAA > 1:615561/1‑52 ATCGAGAACGCCGGTTTTTTTCACGCTGCCGCCGTAGGTAATCAATACGC < 1:3412024/50‑1 ATCGAGAACGCCGGTTTTTTTCACGCTGCCGCCGTAGGTAATCAATACGC < 1:64856/50‑1 TTTTTTTCACGCCGCCGCCGTAGGTAATCAATACGCGAGCATCGTGAGGAATTTG < 1:1465268/55‑1 CGCCGTAGGTAATCAATACGCGAGCATCGTGAGGAATTTGTTCGCGTAAACCAGCGATTGCGCCTTTACCA < 1:3917629/71‑1 CCGTAGGTAATCAATACGCGAGCATCGTGAGGAATTTGTTCGCGTAAACCAGCGATTGCGCCTTTAC < 1:2130389/67‑1 AATTCCAGCACGTCCATGCCTTTCAGGGCATCCAGAACTTGATCGAGAACGCCGGTTTTTTTCACGCTGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2018299‑2018225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccgTAGGTAATCAATACGCGAGCATCGTGAGGAATTTGTTCGCGTAAACCAGCGATTGCGCCTTTACCA < minE/2018221‑2018156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |