| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2548248 = | 93 (1.550) | 3 (0.060) | 3/86 | NT | 3.8% | coding (457/858 nt) | htrL | hypothetical protein |
| ? | minE | 2548278 = | 71 (1.350) | coding (487/858 nt) | htrL | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2548323‑2548248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttggGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTC > minE/2548278‑2548344 TTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA > 1:3689130/1‑71TTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA > 1:353650/1‑71 TTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA < 1:1712979/70‑1 TTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA < 1:3185502/70‑1 TTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA < 1:2146456/70‑1 TTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACAT < 1:891277/70‑1 TACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTTG < 1:3457324/51‑1 ACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATT > 1:2632214/1‑48 TTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTTGG > 1:3218707/1‑48 TCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTTGG > 1:1959799/1‑47 TCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACA > 1:219210/1‑42 TGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTT > 1:2497903/1‑37 TGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTT > 1:2886922/1‑37 TGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTT > 1:1940261/1‑37 CCAAATTTTCAATCCTCGAGTTACATTTGGGATTTCCCATTTGATGA < 1:3007095/47‑1 CAATCCTCGAGTTACATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGG > 1:506297/1‑71 CTCGAGTTACATTTGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTA < 1:3375979/71‑1 ATTTGTGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTA < 1:288293/61‑1 TGGGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTC > 1:233239/1‑70 GGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAA < 1:1988365/47‑1 GGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAA < 1:1650507/47‑1 TTTTTATAGTGAAAAGATGCATCTTACTTTCATCAAATGGGAAATCCCAAATTTTCAATCCTCGAGTTACATTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2548323‑2548248‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttggGATTTCCCATTTGATGAAAGTAAGATGCATCTTTTCACTATAAAAAAAGGGCTTACTGTCACATCTC > minE/2548278‑2548344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |