| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 412,564 | A→C | 12.1% | intergenic (‑209/+80) | leuS ← / ← lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 412,564 | 0 | A | C | 12.1% | 121.0 / 17.4 | 58 | intergenic (‑209/+80) | leuS/lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (37/14); new base C (3/4); total (40/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01 | |||||||||||
ACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGG > minE/412497‑412628 | aCATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGt > 1:1070044/1‑71 (MQ=255)aCATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGt > 1:2805333/1‑71 (MQ=255) cATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGt > 1:3735519/1‑70 (MQ=255) aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGtt > 1:3658326/1‑70 (MQ=255) aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGtt > 1:3663132/1‑70 (MQ=255) aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGtt > 1:2865936/1‑70 (MQ=255) tACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGAccc > 1:2419853/1‑71 (MQ=255) tgtgGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTacc > 1:616835/1‑55 (MQ=255) gtgGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGa < 1:3199598/70‑1 (MQ=255) gtgGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGa < 1:2780015/70‑1 (MQ=255) cGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACgg > 1:3572496/1‑70 (MQ=255) cGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACgg > 1:2252221/1‑70 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTa < 1:1065062/42‑1 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTa < 1:4062031/42‑1 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt < 1:39446/46‑1 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGtt < 1:2104347/46‑1 (MQ=255) aTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATc > 1:3166437/1‑71 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGa > 1:2828395/1‑49 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTaa > 1:3787570/1‑46 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGaaa > 1:2032578/1‑63 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATcc > 1:2221765/1‑71 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATcc > 1:3932766/1‑71 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATcc > 1:3967515/1‑71 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATcc > 1:344865/1‑71 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATc > 1:1827329/1‑70 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCgg > 1:3526532/1‑71 (MQ=255) gcaaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGt > 1:2418179/1‑71 (MQ=255) aaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGgag < 1:1503642/52‑1 (MQ=255) aaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGt > 1:1296239/1‑69 (MQ=255) gcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCg > 1:511175/1‑71 (MQ=255) caaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGt < 1:2430500/71‑1 (MQ=255) ggAACAAAGAACGTCTATTATTATAGTCAGTTAAc < 1:2198958/35‑1 (MQ=255) ggAACAAAGAACGTCTATTATTATAGTCAGTTAAc < 1:701295/35‑1 (MQ=255) ggAACAAAGAACGTCTATTATTATAGTAAGTTAACGa < 1:1023061/37‑1 (MQ=255) gAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGaaa > 1:3395739/1‑50 (MQ=255) aaCAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCg > 1:734113/1‑70 (MQ=255) aCAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCg > 1:3628298/1‑69 (MQ=255) aaaGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGaaa < 1:316210/70‑1 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGaa > 1:2662559/1‑43 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCa > 1:741354/1‑49 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:709592/1‑71 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:1208454/1‑71 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:267737/1‑71 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:1296862/1‑71 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:1397924/1‑71 (MQ=255) aGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat < 1:1451127/71‑1 (MQ=255) aGAACGACTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAatat > 1:7789/1‑71 (MQ=255) gAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATg < 1:3283324/71‑1 (MQ=255) aaCGTCTATTATTATAGTAAGTTAACGACCCGGGAGATg > 1:2878790/1‑39 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAat > 1:2680980/1‑63 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg < 1:2044833/71‑1 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg < 1:4007374/71‑1 (MQ=255) tattattatAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTa > 1:2300909/1‑71 (MQ=255) tattattatAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTa > 1:1219822/1‑71 (MQ=255) tattattatAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTa > 1:2852720/1‑71 (MQ=255) attatAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTcc > 1:1021251/1‑71 (MQ=255) taGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg < 1:1293042/69‑1 (MQ=255) tAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATgg < 1:2750102/54‑1 (MQ=255) tAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTcc < 1:1921080/64‑1 (MQ=255) tAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTcc < 1:699184/64‑1 (MQ=255) | ACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGG > minE/412497‑412628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |