Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 558,552 | G→A | 25.9% | intergenic (+102/‑202) | iaaA → / → cmr | L‑asparaginase/multidrug efflux system protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 558,552 | 0 | G | A | 25.9% | 102.7 / 36.7 | 58 | intergenic (+102/‑202) | iaaA/cmr | L‑asparaginase/multidrug efflux system protein |
Reads supporting (aligned to +/- strand): ref base G (21/22); new base A (9/6); total (30/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.54e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 |
AAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAA > minE/558483‑558620 | aaaGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCgg < 1:80741/71‑1 (MQ=255) aaGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGc < 1:2587882/71‑1 (MQ=255) aaGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGc < 1:352359/71‑1 (MQ=255) aGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAgcagca > 1:2054398/1‑71 (MQ=255) tGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCAt < 1:2312009/70‑1 (MQ=255) tGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATc < 1:945915/71‑1 (MQ=255) gATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCg > 1:1188140/1‑71 (MQ=255) aTTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGTGTAAAGCAGCATCGt < 1:1830799/71‑1 (MQ=255) aTTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGt < 1:107000/71‑1 (MQ=255) aaaaGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCt < 1:3091545/70‑1 (MQ=255) aaaGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCt < 1:1806155/69‑1 (MQ=255) aaTACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTc > 1:1893242/1‑69 (MQ=255) tACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCg < 1:1514336/54‑1 (MQ=255) tACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGc > 1:2137045/1‑71 (MQ=255) aGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGc < 1:2309779/71‑1 (MQ=255) gCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGc > 1:3566350/1‑45 (MQ=255) gCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGc > 1:3339826/1‑45 (MQ=255) gCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTc < 1:536712/58‑1 (MQ=255) cAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCg < 1:2478992/42‑1 (MQ=255) cAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTg > 1:1334649/1‑71 (MQ=255) aaGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCaa > 1:993844/1‑62 (MQ=255) aGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGtt < 1:2813555/71‑1 (MQ=255) aGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGtt < 1:2431906/71‑1 (MQ=255) tCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTa < 1:1320811/71‑1 (MQ=255) gTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTAttt < 1:1518486/50‑1 (MQ=255) gTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTAt > 1:1417727/1‑48 (MQ=255) gTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTAt > 1:2823331/1‑48 (MQ=255) gTTGAGAATAAAGTGCACGTTAAACTGGGTAAAGCGGCATCGTCTTAttt < 1:1227181/50‑1 (MQ=255) ttGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCgg < 1:410514/36‑1 (MQ=255) ttGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTAttt < 1:433165/49‑1 (MQ=255) tGAGAATAATGTGCAGGTTAAACTGGGTAAAGCGGCAt < 1:449511/38‑1 (MQ=255) tGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTc > 1:739790/1‑42 (MQ=255) tGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTc > 1:2017776/1‑42 (MQ=255) gagaATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACggt < 1:1892861/70‑1 (MQ=255) agaATAAAGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACggtgg < 1:1452881/71‑1 (MQ=255) gaATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTccc > 1:2042055/1‑48 (MQ=255) gaATAAAGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACggtgg < 1:3374784/70‑1 (MQ=255) aTAAAGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACggtgggt < 1:4110457/70‑1 (MQ=255) tAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGttt > 1:3740527/1‑60 (MQ=255) tAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTa < 1:3237670/61‑1 (MQ=255) tAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGa > 1:1360687/1‑71 (MQ=255) tAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGa > 1:3522957/1‑71 (MQ=255) aGTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTg > 1:2599459/1‑71 (MQ=255) gTGCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGt < 1:2942778/71‑1 (MQ=255) tGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTa < 1:2845345/71‑1 (MQ=255) gCAGGTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTaa > 1:3841079/1‑71 (MQ=255) cAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCt > 1:3365632/1‑49 (MQ=255) cAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACg > 1:2107775/1‑56 (MQ=255) gTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGtt < 1:1796858/49‑1 (MQ=255) gTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACgg > 1:1743776/1‑54 (MQ=255) gTTAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACgg > 1:2845926/1‑54 (MQ=255) tAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTa > 1:3067251/1‑49 (MQ=255) tAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACggtggg > 1:2242253/1‑56 (MQ=255) tAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCa > 1:3118572/1‑71 (MQ=255) tAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCa > 1:1921087/1‑71 (MQ=255) tAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCa > 1:3467174/1‑71 (MQ=255) tAAACTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCa > 1:935934/1‑71 (MQ=255) aaaCTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACgg > 1:2046715/1‑51 (MQ=255) aaaCTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACgg > 1:700536/1‑51 (MQ=255) aaaCTGGGTAAAGCAGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACgg > 1:837813/1‑51 (MQ=255) gTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGttt < 1:2300535/40‑1 (MQ=255) cGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTtaaataaa < 1:387553/70‑1 (MQ=255) | AAAGTGATTAAAAGGGAGCCAATACAGGCAAGTCGTTGAGAATAAAGTGCAGGTTAAACTGGGTAAAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAA > minE/558483‑558620 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |