| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 837,087 | G→A | 9.8% | A90A (GCG→GCA) | narJ → | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 837,087 | 0 | G | A | 9.8% | 118.1 / 3.9 | 41 | A90A (GCG→GCA) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| Reads supporting (aligned to +/- strand): ref base G (18/18); new base A (2/2); total (20/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 | |||||||||||
CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCAT > minE/837024‑837156 | ccGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtgg < 1:3914957/71‑1 (MQ=255) cgcaCCACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGa < 1:23359/71‑1 (MQ=255) gcCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACct < 1:2252290/71‑1 (MQ=255) accACGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACct > 1:857270/2‑71 (MQ=255) aCGTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACctgc > 1:46547/1‑70 (MQ=255) cGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGCACctgctg < 1:3545037/71‑1 (MQ=255) gTCGCTGCTGCTGTTCGAACATGTTCATGCCGAGTCCCGCGATCGCGGCCAGGCAATGGTGGACCTGCTgg < 1:3787014/71‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGgcg < 1:595993/70‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGgcg < 1:3956713/70‑1 (MQ=255) gTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:3776751/1‑70 (MQ=255) gTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:1805778/1‑70 (MQ=255) ttGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg < 1:242214/52‑1 (MQ=255) ttGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg < 1:2545857/52‑1 (MQ=255) ttGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGAcc < 1:1417426/58‑1 (MQ=255) ttGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTa > 1:3485711/1‑71 (MQ=255) ttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGa > 1:3951436/1‑42 (MQ=255) tGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtg > 1:1407091/1‑46 (MQ=255) tGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcag < 1:923048/70‑1 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGTCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca > 1:3913568/1‑66 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg > 1:4076199/1‑41 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg > 1:3273629/1‑41 (MQ=255) aTGTGCACGGCGAATCCCGCGACCTCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGc < 1:3654186/71‑1 (MQ=255) tgtgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCt > 1:3275405/1‑71 (MQ=255) gtgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCtt > 1:3032360/1‑71 (MQ=255) gCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTa < 1:2712548/71‑1 (MQ=255) cGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACg < 1:4042621/50‑1 (MQ=255) cGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAg > 1:1611202/1‑67 (MQ=255) cGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTaa < 1:2757249/71‑1 (MQ=255) aTCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACa < 1:1775296/71‑1 (MQ=255) tCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAg > 1:4025480/1‑71 (MQ=255) cccGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGc > 1:1330406/1‑71 (MQ=255) ccGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGcc > 1:3590066/1‑71 (MQ=255) gcgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgc > 1:513325/1‑71 (MQ=255) gACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTT‑CAGTTAAACAGCCGCGaa < 1:1569580/71‑1 (MQ=255) aCCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGaa > 1:2019091/1‑71 (MQ=255) gCCAGGCTATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCg < 1:3581183/71‑1 (MQ=255) gCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCg < 1:1094242/71‑1 (MQ=255) gCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAg < 1:32513/45‑1 (MQ=255) gCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGAcc < 1:996935/70‑1 (MQ=255) cGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCa > 1:1275008/1‑70 (MQ=255) cGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCAt > 1:1270231/1‑71 (MQ=255) | CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGCGAATTGCCGGACCAT > minE/837024‑837156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |