| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,747,003 | T→C | 8.0% | intergenic (+87/+122) | srmB → / ← yfiE | ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,747,003 | 0 | T | C | 8.0% | 172.8 / 5.1 | 62 | intergenic (+87/+122) | srmB/yfiE | ATP‑dependent RNA helicase/predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (25/32); new base C (2/3); total (27/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAA > minE/1746933‑1747071 | aaGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCt > 1:1985982/1‑71 (MQ=255) ttAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCAAGCAata > 1:2458556/1‑70 (MQ=255) aaaaGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAatatat > 1:1931771/1‑71 (MQ=255) aaaGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATAtt > 1:3546306/1‑71 (MQ=255) aGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCt > 1:3694874/1‑56 (MQ=40) aGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTg > 1:2733293/1‑70 (MQ=255) tGCTGGCAGACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAt > 1:137012/1‑71 (MQ=255) tGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAt > 1:1851349/1‑71 (MQ=255) cTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAtt < 1:122205/70‑1 (MQ=255) gCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTg < 1:746896/69‑1 (MQ=255) gCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGc < 1:2413217/70‑1 (MQ=255) gCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGc < 1:3160789/70‑1 (MQ=255) cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAAttt > 1:3294067/1‑67 (MQ=255) aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCa < 1:3003091/53‑1 (MQ=255) aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCAc > 1:4054176/1‑70 (MQ=255) aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACg < 1:934481/71‑1 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGa > 1:1688455/1‑70 (MQ=255) aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGa > 1:3920529/1‑70 (MQ=255) aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:1705711/71‑1 (MQ=255) aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:154733/71‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:2087123/70‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:996861/70‑1 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAg > 1:3672688/1‑71 (MQ=255) cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAgg > 1:2490902/1‑71 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:763461/66‑1 (MQ=255) tGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTa > 1:1160001/1‑68 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTg < 1:3119280/55‑1 (MQ=255) gCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGcc > 1:1007775/1‑71 (MQ=255) gATGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTg < 1:2628304/51‑1 (MQ=14) aTGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:2462306/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:3605692/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:671991/70‑1 (MQ=255) aTGCGCTACGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGAt < 1:3721914/70‑1 (MQ=14) tGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACg < 1:2074871/53‑1 (MQ=255) tGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGAt > 1:1513567/1‑55 (MQ=255) cTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCg < 1:3979899/71‑1 (MQ=255) tACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGt > 1:428956/1‑71 (MQ=255) aCGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg > 1:3517398/1‑53 (MQ=255) aCGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGtt > 1:2921837/1‑71 (MQ=14) cGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTc < 1:1198617/71‑1 (MQ=255) cGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTc < 1:3459371/71‑1 (MQ=255) cGCTTATCAGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGtt < 1:2649708/70‑1 (MQ=14) gCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTa > 1:1034879/1‑53 (MQ=255) cTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTg < 1:3115032/50‑1 (MQ=255) aTCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcg < 1:3878535/69‑1 (MQ=255) tCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcgccg < 1:1596953/71‑1 (MQ=255) aGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGt < 1:3085821/61‑1 (MQ=255) aGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCa > 1:1144103/1‑71 (MQ=255) aGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCa < 1:2810920/71‑1 (MQ=255) aGGCCTACATGGCCCATGCAATGTATTGAATTTGCACGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCa > 1:3702629/1‑71 (MQ=11) tACGTGGCTCATGCAATATATTGAATTTGCACGATCtt < 1:2325422/38‑1 (MQ=255) tACGTGGCTCATGCAATATATTGAATTTGCACGATCtt < 1:1999201/38‑1 (MQ=255) tACGTGGCTCATGCAATATATTGAATTTGCACGATCt < 1:2057335/37‑1 (MQ=255) tACGTGGCTCATGCAATATATTGAATTTGCACGATCt < 1:1617068/37‑1 (MQ=255) tACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGAt < 1:2649184/49‑1 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa > 1:2896352/1‑49 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATaa > 1:2978402/1‑49 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg < 1:3837988/69‑1 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc < 1:580446/70‑1 (MQ=255) cGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa > 1:3792565/1‑71 (MQ=255) gTGGCTCATGCAATATATTGAATTTGCACGATCTTGTa > 1:1910464/1‑38 (MQ=255) tGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCg < 1:759210/42‑1 (MQ=255) gCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCAcgccg > 1:792362/1‑58 (MQ=255) gCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa > 1:1902471/1‑71 (MQ=255) | AAGCCTGGTATTAAAAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGCTCATGCAATATATTGAATTTGCACGATCTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAA > minE/1746933‑1747071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |