| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,560,276 | C→T | 45.4% | intergenic (‑16/+182) | yibK ← / ← lldD | predicted rRNA methylase/L‑lactate dehydrogenase, FMN‑linked |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,560,276 | 0 | C | T | 45.4% | 14.5 / 52.1 | 44 | intergenic (‑16/+182) | yibK/lldD | predicted rRNA methylase/L‑lactate dehydrogenase, FMN‑linked |
| Reads supporting (aligned to +/- strand): ref base C (12/12); new base T (8/12); total (20/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGATGTTGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCACCCCGGCCCTCTCCCCGG > minE/2560206‑2560343 | tgatgTTGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGc < 1:669263/71‑1 (MQ=255) atgTTGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTgg > 1:3031743/1‑71 (MQ=255) tgTTGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCggg < 1:3301631/71‑1 (MQ=255) ttGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGc < 1:3292459/66‑1 (MQ=255) ccAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAg < 1:966814/71‑1 (MQ=255) ccAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAg < 1:3560883/71‑1 (MQ=255) ccAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCa < 1:2441324/70‑1 (MQ=255) tATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAg < 1:958847/67‑1 (MQ=255) aTTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAg > 1:1881939/1‑71 (MQ=255) gCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGaa < 1:3973549/71‑1 (MQ=255) ggAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGaaaa < 1:1040052/71‑1 (MQ=255) aaTTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGa > 1:3344383/1‑59 (MQ=255) aaTTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGAt < 1:3477656/60‑1 (MQ=255) aaTTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGaaaa > 1:1773301/1‑69 (MQ=255) tttCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGc < 1:2830053/47‑1 (MQ=255) gTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATa < 1:2513498/53‑1 (MQ=255) gTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGc < 1:770627/70‑1 (MQ=255) ttCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGc < 1:1781391/40‑1 (MQ=255) tCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGa > 1:730290/1‑49 (MQ=255) tCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGa > 1:873616/1‑49 (MQ=255) cGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGa > 1:1073515/1‑48 (MQ=255) gTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGa > 1:1651054/1‑47 (MQ=255) gTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGa > 1:3557506/1‑47 (MQ=255) gTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGaa < 1:1117003/55‑1 (MQ=255) tAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCg < 1:1567067/71‑1 (MQ=255) tAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAg < 1:940850/44‑1 (MQ=255) tAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCg < 1:3031544/71‑1 (MQ=255) aaGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGc > 1:3841703/1‑71 (MQ=255) aGTACGATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAAt > 1:208521/1‑54 (MQ=255) cGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGGAAATTGGTGAGCAg > 1:690812/1‑60 (MQ=255) cGATGTTTAGCATACTGCCCCCTTACTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCttt < 1:2506652/70‑1 (MQ=255) gATGTTTAGCATACTGCCCCCTTAGTGTGGGGGCAGGATAg < 1:1386473/41‑1 (MQ=255) tGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAg > 1:3362725/1‑57 (MQ=255) tttAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCt < 1:76512/71‑1 (MQ=255) gCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTg < 1:2785384/43‑1 (MQ=255) gCATACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCAc < 1:2765189/70‑1 (MQ=255) tACTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCt > 1:3894285/1‑56 (MQ=255) cTGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCACCCCgg < 1:405848/70‑1 (MQ=255) tGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCa > 1:1957044/1‑44 (MQ=255) tGCCCCCTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCa > 1:1962024/1‑44 (MQ=255) ccccTTAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCACCCCGGcc < 1:3439566/68‑1 (MQ=255) cccTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCtt < 1:2401484/50‑1 (MQ=255) ccTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTc < 1:1876351/52‑1 (MQ=255) cTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGc < 1:3280271/37‑1 (MQ=255) tAGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCtt > 1:1920684/1‑46 (MQ=255) aGTGTGGGGGCAGGATAGCAGAAAATTGGTGAGCa > 1:1310660/1‑35 (MQ=255) aGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCa > 1:4118928/1‑35 (MQ=255) aGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCa > 1:3800670/1‑35 (MQ=255) gtgtGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCACCCCGGCCCTCTCCCCgg < 1:563932/71‑1 (MQ=255) | TGATGTTGCCAGTATTTGGCGGAATTTCTGGTTCGTAAAGTACGATGTTTAGCATACTGCCCCCTTAGTGCGGGGGCAGGATAGCAGAAAATTGGTGAGCAGTGCGGCCTTTTCCCCTCACCCCGGCCCTCTCCCCGG > minE/2560206‑2560343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |