| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,586,047 | G→T | 9.6% | I410I (ATC→ATA) | mdtF ← | multidrug transporter, RpoS‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,586,047 | 0 | G | T | 9.6% | 333.2 / 12.1 | 103 | I410I (ATC→ATA) | mdtF | multidrug transporter, RpoS‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (43/50); new base T (3/7); total (46/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.03e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
TTTATGCGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGA > minE/2585978‑2586114 | tttATGCGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGa > 1:2428704/1‑71 (MQ=255) aTGCGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATg < 1:3102437/70‑1 (MQ=255) cGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCg < 1:1850986/70‑1 (MQ=255) cGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCg < 1:2174545/70‑1 (MQ=255) tCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATTACACGCTCGACGTTCTCCACCACCACGATGGCGTCa > 1:3425377/1‑71 (MQ=255) tCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCa > 1:548634/1‑71 (MQ=255) gCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATc > 1:2163682/1‑71 (MQ=255) cttcttttGGCGGGAGCTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCatcatc < 1:3797960/70‑1 (MQ=12) ccttcGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATccac > 1:2138510/1‑70 (MQ=255) ccttcGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATccac < 1:3623113/70‑1 (MQ=255) ccttcGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATccac < 1:1032638/70‑1 (MQ=255) cggcggTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGt < 1:2144167/70‑1 (MQ=255) ggcggTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTaa < 1:2388022/71‑1 (MQ=255) gcggTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAAc < 1:3349906/71‑1 (MQ=255) gggaGCTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGccc < 1:626892/68‑1 (MQ=9) gggaGCTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGccc < 1:3071193/68‑1 (MQ=9) gTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGa < 1:661694/48‑1 (MQ=255) gTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAAccc > 1:790588/1‑70 (MQ=255) tAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCCCCAGTAACCCTa > 1:1636305/1‑71 (MQ=255) tAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCt < 1:52052/70‑1 (MQ=255) tAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTa > 1:767643/1‑71 (MQ=255) tAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTa < 1:3260103/71‑1 (MQ=255) gaGCTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGcccga < 1:4053857/70‑3 (MQ=255) aGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAg > 1:1719769/1‑62 (MQ=255) aGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCt > 1:4113399/1‑69 (MQ=255) aGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTAt > 1:1670558/1‑71 (MQ=255) gCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCGCGATGGCGTCATcca > 1:1881326/1‑57 (MQ=255) gCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATcca > 1:1924630/1‑57 (MQ=255) gCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATcca > 1:579385/1‑57 (MQ=255) gCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATc > 1:1506712/1‑55 (MQ=255) cTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAAc < 1:1695424/64‑1 (MQ=255) cTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCatcatcg < 1:3896454/55‑2 (MQ=255) cTTATCCTCCATCATCACGCGCTCGACGTTCTCCACCACCACTATCGCatcatcg < 1:3377221/55‑2 (MQ=255) tATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGc > 1:920585/1‑70 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCCCCACGATGGCGTCATccacca > 1:837820/1‑56 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGc < 1:2556031/45‑1 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGc < 1:3594923/45‑1 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGc < 1:176843/45‑1 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGt > 1:1107565/1‑58 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGc > 1:1404749/1‑69 (MQ=255) aTCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGc > 1:899383/1‑69 (MQ=255) tCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCt < 1:3825497/63‑1 (MQ=255) cTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGt > 1:4047199/1‑45 (MQ=255) cTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAg > 1:2156977/1‑70 (MQ=255) ttCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATc < 1:562592/48‑1 (MQ=255) ttCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCa > 1:3505798/1‑71 (MQ=255) ccGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAg < 1:2466172/67‑1 (MQ=255) ccGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAg < 1:1017283/67‑1 (MQ=255) ccGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCa < 1:2726256/69‑1 (MQ=255) cAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCAt < 1:3209622/70‑1 (MQ=255) cAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATc < 1:2465905/71‑1 (MQ=255) aaTGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATc < 1:644711/70‑1 (MQ=255) aTGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCt < 1:1102717/54‑1 (MQ=255) aTGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCa < 1:1663049/67‑1 (MQ=255) aTGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCa < 1:3473991/67‑1 (MQ=255) tGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATccc > 1:1348189/1‑70 (MQ=255) tGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCg < 1:814906/71‑1 (MQ=255) acgcGCTCGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGCCCGATGGCAAGCACCATCCCGaa > 1:2630334/4‑71 (MQ=2) acacGCTCGACGTTCTCCACCACCACGATGGCGTCATccacca > 1:2704051/1‑43 (MQ=255) acacGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCAc > 1:3560893/1‑62 (MQ=255) acacGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGaa > 1:501919/1‑71 (MQ=255) acacGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGaa > 1:3412148/1‑71 (MQ=255) acGCTCGACGTTCTCCACCACCACGATGGCGTCATccacca > 1:4037653/1‑41 (MQ=255) acGCTCGACGTTCTCCACCACCACGATGGCGTCATccacca > 1:3612529/1‑41 (MQ=255) acGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACa < 1:2006510/71‑1 (MQ=255) acGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACa < 1:3927935/71‑1 (MQ=255) tCGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGCCCGATGGCAAGCACCATCCCGAAc < 1:379082/66‑1 (MQ=9) cGACGTTCTCCACCACCACTATCGCATCATCGACGAGCAGCCCGATGGCAAGCACCATCCCGAACATCGt > 1:3853016/1‑70 (MQ=2) gACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTc < 1:2081560/70‑1 (MQ=255) gACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTc < 1:1334357/70‑1 (MQ=255) gACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTc < 1:3155042/70‑1 (MQ=255) gACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCa < 1:115142/71‑1 (MQ=255) gACGTTCTCCAACACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTc < 1:1914800/70‑1 (MQ=255) ttCTCCACCACCACGATGGCGTCATCCACCAGTAAccc < 1:1429061/38‑1 (MQ=255) ttCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATa < 1:920801/63‑1 (MQ=255) tctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATcc > 1:4138693/1‑54 (MQ=255) tctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATcc > 1:932832/1‑54 (MQ=255) ctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCAGCATACCGAACATAGTCAACgtgt > 1:3743712/1‑71 (MQ=255) ctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAAc > 1:2643675/1‑67 (MQ=255) ctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAAc > 1:3828203/1‑67 (MQ=255) ctcCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACgtg < 1:2930515/70‑1 (MQ=255) caccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAAc < 1:4077617/55‑1 (MQ=255) caccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGtt < 1:2970651/69‑1 (MQ=255) caccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTg < 1:1637659/70‑1 (MQ=255) caccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGa < 1:667836/71‑1 (MQ=255) accaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGAt < 1:1880151/71‑1 (MQ=255) ccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACa < 1:3462353/54‑1 (MQ=255) ccaccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCa < 1:591886/60‑1 (MQ=255) caccacGATTGCGTCATCCACAAGTAACCCTATCGCCAGCACCATCCCGAACa < 1:1477405/53‑1 (MQ=21) accacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGa > 1:1766881/1‑67 (MQ=255) ccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGa < 1:3112642/48‑1 (MQ=255) ccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGa > 1:4011644/1‑66 (MQ=255) ccacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTg < 1:3833700/71‑1 (MQ=255) cacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTg > 1:1881580/1‑70 (MQ=255) cacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGa < 1:2403952/71‑1 (MQ=255) cacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGa < 1:3836052/71‑1 (MQ=255) cacGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGa < 1:1635053/71‑1 (MQ=255) acGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGa > 1:2046148/1‑70 (MQ=255) acGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGa > 1:3312876/1‑70 (MQ=255) acGATGGCGTCATCCACCACTAACCCTATCGACAGCAAGATCCCGAACATAGTCAACGTGTAGAAGGt > 1:924041/1‑68 (MQ=25) | TTTATGCGTCGCTTCCTTCGGCGGTAGCTTATCTTCCGCAATGACACGCTCGACGTTCTCCACCACCACGATGGCGTCATCCACCAGTAACCCTATCGCCAGCACCATCCCGAACATAGTCAACGTGTTGATGGTGA > minE/2585978‑2586114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |