| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,306 | C→A | 20.7% | intergenic (‑11/+2) | arsC ← / ← arsB | arsenate reductase/arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,306 | 0 | C | A | 20.7% | 216.6 / 27.5 | 77 | intergenic (‑11/+2) | arsC/arsB | arsenate reductase/arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (32/29); new base A (10/6); total (42/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 | |||||||||||
TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375 | tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:3187360/1‑71 (MQ=255) cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAt > 1:213189/1‑70 (MQ=255) cGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACa < 1:2099097/71‑1 (MQ=255) gTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa > 1:1597207/1‑70 (MQ=255) tATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa > 1:2672352/1‑69 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa > 1:2202706/1‑66 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg > 1:1639357/1‑70 (MQ=255) aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg < 1:2030771/70‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaa < 1:2384280/71‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaa < 1:2880073/71‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:2113878/70‑1 (MQ=255) cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:2634848/70‑1 (MQ=255) gcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa < 1:2336324/71‑1 (MQ=255) cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa > 1:745275/1‑68 (MQ=255) gACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:77634/71‑1 (MQ=255) gACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:885400/71‑1 (MQ=255) aCGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagag < 1:3456575/71‑1 (MQ=255) aCGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagag < 1:3804033/71‑1 (MQ=255) tGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:427661/67‑1 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:3346957/1‑67 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga < 1:3826643/67‑1 (MQ=255) ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg < 1:2828871/71‑1 (MQ=255) cGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:1790879/1‑63 (MQ=255) cGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:2236511/1‑63 (MQ=255) cAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagagagc > 1:1754559/1‑65 (MQ=255) cAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa > 1:1723584/1‑60 (MQ=255) cAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa > 1:2392040/1‑60 (MQ=255) ccGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGcc < 1:1336311/71‑1 (MQ=255) cGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgcgc > 1:3884315/1‑69 (MQ=255) tgtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:1906276/1‑51 (MQ=255) tgtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAgagaga < 1:1168801/56‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:3507236/40‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGcc < 1:2358810/63‑1 (MQ=255) tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcag < 1:1479919/70‑1 (MQ=255) gATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa > 1:829721/1‑40 (MQ=255) aTAGATGGTAATGTTGCTCATATCAGTATCTAATTACaaa > 1:3230023/1‑40 (MQ=38) aTAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCa > 1:3451772/1‑62 (MQ=255) aTAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:31842/1‑69 (MQ=255) tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:135342/43‑1 (MQ=255) agaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggcca > 1:1307160/3‑69 (MQ=255) gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccagag > 1:417408/2‑69 (MQ=255) aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg > 1:1405204/1‑71 (MQ=255) aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg > 1:2351324/1‑71 (MQ=255) aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg < 1:3550584/71‑1 (MQ=255) ggTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTca > 1:4039555/1‑71 (MQ=255) ggTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTca > 1:4030391/1‑71 (MQ=255) gTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAgcgc < 1:831615/59‑1 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:3896011/1‑40 (MQ=38) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTgaca < 1:873995/71‑1 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTgaca < 1:1124709/71‑1 (MQ=255) aaTGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAg > 1:1842547/1‑48 (MQ=255) aTGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGt < 1:607554/45‑1 (MQ=255) tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGCGACGTAGCGCCAGCGCAGCCAGCGTCACAAAc < 1:666367/71‑1 (MQ=255) tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgcgc < 1:786112/49‑1 (MQ=255) tGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCCGCGCGGCCAGAGt < 1:4037393/64‑1 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:1130018/1‑38 (MQ=255) gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:1021749/1‑69 (MQ=255) ttGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:2393771/1‑37 (MQ=255) ttGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAg < 1:2015386/71‑1 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:836820/1‑35 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:2224310/1‑35 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgc > 1:2944192/1‑41 (MQ=37) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACaaa > 1:2576625/1‑68 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:3694442/70‑1 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAg > 1:2906983/1‑71 (MQ=255) atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcagg > 1:3357550/1‑71 (MQ=255) tatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggc < 1:3069705/71‑1 (MQ=255) tatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcagg > 1:2013140/1‑70 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:2561007/1‑71 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:1528910/1‑71 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:1521584/1‑71 (MQ=255) tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag < 1:1319623/71‑1 (MQ=255) aGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc > 1:3974419/1‑52 (MQ=255) gTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagccagc < 1:2570829/48‑1 (MQ=255) tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTc < 1:3517368/71‑1 (MQ=255) tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTc < 1:1207333/71‑1 (MQ=255) aTCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCa > 1:1475760/1‑71 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGcaca < 1:21487/39‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:4059495/1‑41 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGca < 1:3236470/39‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt < 1:289700/47‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt < 1:3392721/47‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:2182550/51‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:94865/51‑1 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc > 1:961741/1‑48 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAt > 1:2220851/1‑71 (MQ=255) tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAt > 1:1229331/1‑71 (MQ=255) tctaATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:1143955/1‑71 (MQ=255) ctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:581078/1‑52 (MQ=255) tcATTACATAGTGAAAGAGATACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1696701/49‑1 (MQ=38) tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1323027/49‑1 (MQ=255) tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1005448/49‑1 (MQ=255) tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1005006/49‑1 (MQ=255) tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGa > 1:1610239/1‑71 (MQ=255) tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGa > 1:87160/1‑71 (MQ=255) cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAggg > 1:3077170/1‑64 (MQ=255) cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATg > 1:3475973/1‑69 (MQ=255) cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATg > 1:3463881/1‑69 (MQ=255) | TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |