| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,595,405 | C→G | 9.3% | S398T (AGC→ACC) ‡ | arsB ← | arsenite/antimonite transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,595,405 | 0 | C | G | 9.3% | 253.1 / 13.3 | 86 | S398T (AGC→ACC) ‡ | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (36/42); new base G (2/6); total (38/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAAT > minE/2595336‑2595475 | aGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCt < 1:3509221/71‑1 (MQ=255)aGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATACCCAGCt < 1:2398680/71‑1 (MQ=255) gcggccagaGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGAt > 1:304701/4‑71 (MQ=255) gcAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGa > 1:1051765/1‑70 (MQ=255) gcAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGa > 1:345183/1‑70 (MQ=255) ccagcGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTg < 1:3610481/65‑1 (MQ=255) cagcGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCa > 1:542016/1‑71 (MQ=255) tCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttc > 1:2031137/1‑71 (MQ=255) tCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttc < 1:561201/71‑1 (MQ=255) tCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttc < 1:1822834/71‑1 (MQ=255) acaAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTg < 1:484389/57‑1 (MQ=255) acaAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTg < 1:1752835/57‑1 (MQ=255) acaAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttctt > 1:2165363/1‑71 (MQ=255) acaAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttctt > 1:2506286/1‑71 (MQ=255) caAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttcttc < 1:1889340/71‑1 (MQ=255) caAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttcttc > 1:2525046/1‑71 (MQ=255) caAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttcttc < 1:2508316/71‑1 (MQ=255) gCACAGGCAGGGTCATGTTAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGaa < 1:3516601/71‑1 (MQ=255) acaGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAg < 1:1201508/71‑1 (MQ=255) ggcaggGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTc < 1:3288447/51‑1 (MQ=255) ggcaggGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTc < 1:848417/51‑1 (MQ=255) gcaggGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACg > 1:330065/1‑71 (MQ=255) gcaggGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACg > 1:51357/1‑71 (MQ=255) gggTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATAttcttc < 1:974816/56‑1 (MQ=255) ggTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTg > 1:76264/1‑69 (MQ=255) tCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGc < 1:770669/71‑1 (MQ=255) cATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGc > 1:3696913/1‑70 (MQ=255) cATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGc > 1:2458076/1‑70 (MQ=255) cATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATAttttt < 1:315477/51‑1 (MQ=255) aTGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGc > 1:2529828/1‑69 (MQ=255) aTGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCa < 1:3659215/71‑1 (MQ=255) aTGATAATCACTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTa > 1:4099395/1‑61 (MQ=255) aTGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCa < 1:3072840/71‑1 (MQ=255) aTGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCa > 1:1819255/1‑71 (MQ=255) tGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCag < 1:2091029/71‑1 (MQ=255) gATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCat > 1:1226182/1‑42 (MQ=255) gATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCa > 1:2359636/1‑69 (MQ=255) gATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCa > 1:2284123/1‑69 (MQ=255) aTAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCagag > 1:1817348/1‑71 (MQ=255) aTAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCa > 1:2737528/1‑68 (MQ=255) tAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgt < 1:528847/71‑1 (MQ=255) aTCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgta < 1:2374533/70‑1 (MQ=255) tCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagc < 1:3396641/71‑1 (MQ=255) ccTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcg > 1:2036715/1‑70 (MQ=255) cTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCaga < 1:3315332/63‑1 (MQ=255) gTACGGAAGTAATATCCCGAGCTGATAGTCATATTCTTCTGCGAAAg < 1:3914880/47‑1 (MQ=255) gTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGc < 1:3287712/54‑1 (MQ=255) gTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGc < 1:438968/54‑1 (MQ=255) gTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgt > 1:436095/1‑63 (MQ=255) tACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgtagc < 1:1214801/70‑1 (MQ=255) tACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgtagc > 1:3381718/1‑70 (MQ=255) tACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgtagc < 1:528318/70‑1 (MQ=255) tACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGcc < 1:1973345/71‑1 (MQ=255) ctgAAGTAATATCCCCTGCTGATAGTCATATTCTTCTGCGAAAGt < 1:3977680/43‑1 (MQ=255) cGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGt < 1:2361278/45‑1 (MQ=255) cGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAg > 1:3162509/1‑71 (MQ=255) cGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCa < 1:783470/70‑1 (MQ=255) ggAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAg < 1:2964930/43‑1 (MQ=255) gAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGc > 1:3318851/1‑71 (MQ=255) gAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCa < 1:778668/68‑1 (MQ=255) aaGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGc > 1:213149/1‑70 (MQ=255) tAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTAcc < 1:2274053/71‑1 (MQ=255) tAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTAcc < 1:3748884/71‑1 (MQ=255) tAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAgc < 1:2155694/39‑2 (MQ=12) aaTATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTa < 1:1499285/68‑1 (MQ=255) aaTATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTa < 1:2452325/68‑1 (MQ=255) aaTATCCCCAGCTGATAGTCATATTCTTCTGCGAAACTACg > 1:442012/1‑41 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgta > 1:478390/1‑53 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgta > 1:1923009/1‑53 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTa < 1:1208785/67‑1 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCaa > 1:148406/1‑71 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCaa > 1:3269888/1‑71 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCa < 1:473574/70‑1 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCa < 1:3014649/70‑1 (MQ=255) atatCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAAAGTAGCGTAGCCAGGCTACCaa > 1:844001/1‑71 (MQ=255) tCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTa < 1:3823627/35‑1 (MQ=255) tCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgta < 1:140861/50‑1 (MQ=255) tCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGcc > 1:548470/1‑58 (MQ=255) ccccAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgtagc < 1:3824497/56‑1 (MQ=255) ccccAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTgg > 1:2661469/1‑71 (MQ=255) cccAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTggg > 1:3862579/1‑71 (MQ=255) ccAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTgggg > 1:1200205/1‑71 (MQ=255) cAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgta < 1:698790/51‑1 (MQ=255) cAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgta < 1:1175047/51‑1 (MQ=255) aGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTa < 1:3205980/71‑1 (MQ=255) gCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACaaa > 1:1958845/1‑62 (MQ=255) cTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAgtagcgta < 1:1840950/48‑1 (MQ=255) cTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAAt < 1:1007563/71‑1 (MQ=255) | AGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGATAATCCCTGTACGGAAGTAATATCCCCAGCTGATAGTCATATTCTTCTGCGAAAGTACGTGCAGCCAGAGTAGCGTAGCCAGGCTACCAATTGGGGTAAT > minE/2595336‑2595475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |