Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2954141	2954472	332	33 [0]	[0] 135	holD	DNA polymerase III, psi subunit

GAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAG  >  minE/2954081‑2954140                                                            | gAGCTATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:78296/60‑1 (MQ=255) gAGCGATTCTCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:853330/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGGCTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1205818/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGGAGTTACAGAAACTGGGCATTACCCAg  <  1:295880/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:766457/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:232768/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:238238/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:269766/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:323691/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:329760/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:472302/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:481172/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:215230/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:766875/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:776411/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:881526/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:898537/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1051835/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1816722/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1803093/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1663756/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1509513/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1462444/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1384104/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:13195/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1300558/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1280373/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1101479/60‑1 (MQ=255) gAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1055797/60‑1 (MQ=255)  aGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:764941/59‑1 (MQ=255)  aGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1148803/59‑1 (MQ=255)  aGCGATTCGCTATGACATCCCGACGAGACTGGCAGGTACAGCAACTGGGCATTACCCAg  <  1:117921/59‑1 (MQ=255)    cGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAg  <  1:1693997/57‑1 (MQ=255)                                                            | GAGCGATTCGCTATGACATCCCGACGAGACTGGCAGTTACAGCAACTGGGCATTACCCAG  >  minE/2954081‑2954140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑