Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	554551	554668	118	41 [0]	[0] 91	[fsaA]	[fsaA]

CGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGA  >  minE/554490‑554550                                                             | cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:567645/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:218840/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:236597/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:30025/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:310564/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:353299/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:372108/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:440622/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:513085/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:522925/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:211610/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:600225/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:638938/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:660967/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:674490/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:684548/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:7695/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:773772/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:934600/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:951166/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1416149/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1071810/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1105199/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1125102/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1188082/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1193550/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1262837/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1320879/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1381601/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1396316/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1043884/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1589699/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1620228/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1723141/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1735627/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1744932/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:185801/61‑1 (MQ=255) cGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTCTGa  <  1:1711996/61‑1 (MQ=255)  gTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:1459229/60‑1 (MQ=255)   tCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:130457/59‑1 (MQ=255)          ttCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGa  <  1:38483/52‑1 (MQ=255)                                                             | CGTCAACTGTTCAGAGAGTTTTCCCGTGATAGTCTACATTCAGACAAAAAGTACATTTTGA  >  minE/554490‑554550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑