Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	559142	559279	138	92 [0]	[0] 127	cmr	multidrug efflux system protein

TGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCAA  >  minE/559082‑559141                                                            | tGTTGCGCTTCTTGCAGGGCATATGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:477545/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:431031/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:676662/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:661817/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:658422/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:65151/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:638591/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:615064/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:575793/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:53547/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:49455/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:482752/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:699490/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:391471/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:385557/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:381263/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:360514/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:359798/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:349368/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:321892/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:219381/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:217626/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1009414/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:849590/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:998570/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:99490/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:989086/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:966484/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:958279/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:957004/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:9550/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:946877/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:945112/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:926822/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:909220/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:195343/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:834279/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:822584/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:803479/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:759728/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:753737/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:748064/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:72360/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:722630/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:719186/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:704961/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1185770/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1457757/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1456037/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:141280/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1339701/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1328953/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1308005/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1306199/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1262854/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1255156/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1247857/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1221263/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1466435/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1182667/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1174651/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1155935/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1154762/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1136731/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1134678/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:11103/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1093275/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1091267/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1040936/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1595010/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1864427/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1864176/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1842254/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1814024/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1813027/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1709135/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1694942/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:168379/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1639007/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1598651/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1871184/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1577952/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1572440/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:156806/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1566209/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1551406/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1546419/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1518314/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1513462/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1513282/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:1507978/1‑60 (MQ=255) tGTTGCGCTTCTTGCAGGGCATAAGCATCTGTTTCATTGGCGCTGTGGGATACGCCGCaa  >  1:275237/1‑60 (MQ=255)                                                            | TGTTGCGCTTCTTGCAGGGCATAAGCCTCTGTTTCATTGGCGCTGTGGGATACGCCGCAA  >  minE/559082‑559141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑