Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	768750	768908	159	74 [0]	[0] 104	phoQ	sensory histidine kinase in two‑compoent regulatory system with PhoP

TTCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAG  >  minE/768688‑768749                                                              | ttCAGCCAGTCAGGCTGGTTCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:633960/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:348003/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:461986/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:456521/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:44991/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:440165/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:423721/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:40224/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:388943/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:371446/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:476973/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:317828/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:306041/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:289011/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:288190/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:261880/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:253636/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:246366/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1041565/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:716846/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:963080/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:952014/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:940485/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:895570/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:781503/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:781494/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:731546/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:718628/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:229429/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:686519/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:664891/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:650251/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:635011/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:59655/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:579689/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:557623/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1162801/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1373847/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1360754/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1349437/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1340193/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1261431/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1247525/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1215806/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1192745/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1857404/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1155979/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1102275/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1098419/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1084707/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1075516/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1072303/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1061503/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1645135/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:209456/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1849136/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1821025/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1776343/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:175592/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1703383/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1683775/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1654774/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1390595/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1641749/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1598842/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1593911/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1566482/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1493058/62‑1 (MQ=255) ttCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:146735/62‑1 (MQ=255)  tCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1176942/61‑1 (MQ=255)  tCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1296644/61‑1 (MQ=255)  tCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:52428/61‑1 (MQ=255)       cAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:1147612/56‑1 (MQ=255)             tgCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAg  <  1:553176/49‑1 (MQ=255)                                                              | TTCAGCCAGTCAGGCTGGATCATCTTCATCAGCCAGGGCACGTCACGTTGCGCCCATAAAAG  >  minE/768688‑768749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑