Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1180769	1180961	193	79 [0]	[0] 92	[gapA]	[gapA]

GCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACT  >  minE/1180707‑1180768                                                              | gCGTTCTGTGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1123607/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATGTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1697601/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGTCGAAGTTTGCACt  <  1:1035109/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:368560/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:602468/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:601367/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:565287/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:563572/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:553657/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:506086/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:443693/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:43324/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:429201/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:65355/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:325031/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:297855/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:255949/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:253183/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:23644/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:224124/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:221423/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:86754/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:987693/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:987092/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:986803/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:974677/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:966194/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:911341/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:903108/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:878167/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:87421/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:616116/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:860652/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:829020/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:821506/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:818006/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:77109/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:751880/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:74789/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1869636/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1354201/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1490023/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1462535/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1400642/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1387084/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1380768/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:137441/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1367104/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1358533/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1463648/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1351975/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1326069/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1173709/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1104328/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1088636/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1064765/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1042678/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1027784/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1646913/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1009950/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1866450/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1865085/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1861685/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1813905/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1756925/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1745976/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1739739/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1496945/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1598484/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1582511/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1563114/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1562552/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1542882/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1534538/62‑1 (MQ=255) gCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1523463/62‑1 (MQ=255)   gTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1889211/60‑1 (MQ=255)         ggCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:1255126/54‑1 (MQ=255)              cacCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:925000/49‑1 (MQ=255)                        gACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACt  <  1:813133/39‑1 (MQ=255)                                                              | GCGTTCTGGGCTACACCGAAGATGACGTAGTATCTACCGATTTCAACGGCGAAGTTTGCACT  >  minE/1180707‑1180768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑