Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1836306	1836679	374	81 [0]	[0] 19	rpoS	RNA polymerase, sigma S (sigma 38) factor

ATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATC  >  minE/1836246‑1836305                                                            | atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCTCAGGCCTTCAACCTGAATc  <  1:487590/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:250905/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:409235/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:392126/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:382365/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:37493/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:353142/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:349746/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:342203/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:314544/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:461063/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:235444/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1889271/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:179826/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1774436/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1764460/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1748270/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1737815/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:173709/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1008536/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:794128/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:990663/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:982139/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:952948/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:945708/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:917297/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:907661/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:89544/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:861994/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:826002/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:429626/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:790619/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:757710/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:732750/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:661358/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:615151/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:551374/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:485798/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1734838/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1267767/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1449229/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1723002/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1427058/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:140855/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1407066/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1406002/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1398453/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1303899/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1281415/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1447214/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1196699/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1167766/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1163912/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1163911/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1160269/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1095615/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:108078/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1028258/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1023241/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1485834/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1722851/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1713617/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:167033/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1662162/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1659839/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1650953/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1647078/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:163614/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1599950/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:159748/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1585180/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1527999/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1492387/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1487883/60‑1 (MQ=255) atatTCAGCCCCTGCGTTTGCAGGATATCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:877565/60‑1 (MQ=255) atatTAAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1425041/60‑1 (MQ=255)  tatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1266800/59‑1 (MQ=255)  tatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1571651/59‑1 (MQ=255)  tatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1682418/59‑1 (MQ=255)  tatTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:407900/59‑1 (MQ=255)          cccTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATc  <  1:1822246/51‑1 (MQ=255)                                                            | ATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAACCTGAATC  >  minE/1836246‑1836305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑