Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2373877	2374141	265	86 [0]	[0] 115	rfaH	DNA‑binding transcriptional antiterminator

CTGCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGCC  >  minE/2373815‑2373876                                                              | ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAATGACAGGCTGTGAATTGcc  <  1:1803482/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:357023/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:597898/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:575071/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:570560/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:53915/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:536725/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:536684/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:481079/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:432431/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:36770/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:367477/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:602662/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:352856/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:344457/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:306501/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:300297/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:248841/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:244638/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:194617/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1849983/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:828014/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:995987/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:994964/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:993871/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:983055/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:980785/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:969701/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:93589/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:880436/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:865381/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1014135/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:82477/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:765964/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:764350/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:751220/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:729688/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:718101/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:706750/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:659831/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:614210/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1346693/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:154951/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1526859/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1516944/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1493307/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1469379/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1451678/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1403835/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:138542/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1380318/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1831112/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1262708/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1246369/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1245090/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1214229/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1208286/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1149636/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1111654/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1099121/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1001500/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1568689/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1844802/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1829058/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1828332/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1800635/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:179975/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1793570/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1714153/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1672288/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1670317/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1665622/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1642617/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1614764/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1588194/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1550722/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTCAACGTGCACAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:180861/62‑1 (MQ=255) ctgCAAGCGCGGGCAACTTAAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:868223/62‑1 (MQ=255)  tgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1658653/61‑1 (MQ=255)  tgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:786301/61‑1 (MQ=255)  tgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1746159/61‑1 (MQ=255)  tgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:603340/61‑1 (MQ=255)  tgCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1018114/61‑1 (MQ=255)     aaGCGCGGGCAACTTCAACGGGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:1851729/58‑1 (MQ=255)              cAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGcc  <  1:673246/49‑1 (MQ=255)                aCTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGATTTGcc  <  1:1157005/47‑1 (MQ=255)                                                              | CTGCAAGCGCGGGCAACTTCAACGTGCCCAGGAACACCTCGAAAGACAGGCTGTGAATTGCC  >  minE/2373815‑2373876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑